2FES Hydrolase Hydrolase Inhibitor date Dec 16, 2005
title Orally Active Thrombin Inhibitors
authors H.W.Hoeffken
compound source
Molecule: Thrombin Light Chain
Chain: L
Ec: 3.4.21.5
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Thrombin Heavy Chain
Chain: H
Ec: 3.4.21.5

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Decapeptide Hirudin Analogue
Chain: D
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic
Other_details: Deduced From C-Terminus Of Hirudin
symmetry Space Group: C 1 2 1
R_factor 0.170 R_Free 0.220
crystal
cell
length a length b length c angle alpha angle beta angle gamma
71.240 72.390 73.060 90.00 101.01 90.00
method X-Ray Diffractionresolution 2.42 Å
ligand 3SP, ALC, HYP, SIN, SMF BindingDB enzyme Hydrolase E.C.3.4.21.5 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
H


L


Primary referenceOrally active thrombin inhibitors. Part 1: optimization of the P1-moiety., Mack H, Baucke D, Hornberger W, Lange UE, Seitz W, Hoffken HW, Bioorg Med Chem Lett. 2006 May 15;16(10):2641-7. Epub 2006 Mar 6. PMID:16517159
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk]
  • Biological Unit Coordinates (2fes.pdb1.gz) 51 Kb
  • LPC: Ligand-Protein Contacts for 2FES
  • CSU: Contacts of Structural Units for 2FES
  • Likely Quarternary Molecular Structure file(s) for 2FES
  • Retrieve 2FES in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2FES from S2C, [Save to disk]
  • View 2FES in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2FES
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2FES, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2fes] [2fes_D] [2fes_L] [2fes_H]
  • SWISS-PROT database: [P00734]
  • Domain organization of [THRB_HUMAN] by SWISSPFAM
  • Domain found in 2FES: [Tryp_SPc ] by SMART
  • Other resources with information on 2FES
  • Community annotation for 2FES at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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