2FFW Ligase date Dec 20, 2005
title Solution Structure Of The Rbcctrim B-Box1 Domain Of Human M With A Ring
authors M.A.Massiah, B.N.Simmons, K.M.Short, T.C.Cox
compound source
Molecule: Midline-1
Chain: A
Fragment: B-Box 1 Domain (Residues: 87 - 164)
Synonym: Tripartite Motif Protein 18, Putative Transcriptio Xprf, Midin, Ring Finger Protein 59;
Ec: 6.3.2.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mid1, Fxy, Rnf59, Trim18, Xprf
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-4t2
methodSolution NMR
ligand ZN enzyme Ligase E.C.6.3.2 BRENDA
note 2FFW is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structure of the RBCC/TRIM B-box1 domain of human MID1: B-box with a RING., Massiah MA, Simmons BN, Short KM, Cox TC, J Mol Biol. 2006 Apr 28;358(2):532-45. Epub 2006 Feb 20. PMID:16529770
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (303 Kb) [Save to disk]
  • Biological Unit Coordinates (2ffw.pdb1.gz) 23 Kb
  • LPC: Ligand-Protein Contacts for 2FFW
  • CSU: Contacts of Structural Units for 2FFW
  • Original NMR restraints for 2FFW from PDB
  • Retrieve 2FFW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2FFW from S2C, [Save to disk]
  • View 2FFW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2FFW
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2FFW, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ffw_A] [2ffw]
  • SWISS-PROT database: [O15344]
  • Domain organization of [TRI18_HUMAN] by SWISSPFAM
  • Domain found in 2FFW: [BBOX ] by SMART
  • Other resources with information on 2FFW
  • Community annotation for 2FFW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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