2FGB Oxidoreductase date Dec 21, 2005
title Crystal Structure Of Human 17bet A-Hydroxysteroid Dehydrogen In Complexes With Peg And Nadp
authors W.Qiu, M.Zhou, A.Azzi, V.Luu-The, F.Labrie, S.X.Lin
compound source
Molecule: Aldo-Keto Reductase Family 1 Member C3
Chain: A
Synonym: Trans-1,2- Dihydrobenzene-1,2-Diol Dehydrogenase, Hydroxysteroid Dehydrogenase Type 2, 3-Alpha-Hsd Type 2, 3- Type II, Brain, Prostaglandin F Synthase, Pgfs, Estradiol 1 Dehydrogenase, 17-Beta-Hydroxysteroid Dehydrogenase Type 5, Hsd 5, Chlordecone Reductase Homolog Hakrb, Ha1753, Dihydro Dehydrogenase Type I, Dihydrodiol Dehydrogenase 3, Dd3, Dd-
Ec: 1.1.1.62, 1.1.1.213, 1.1.1.188
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Akr1c3, Ddh1, Kiaa0119, Pgfs
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pcmv-Neo
symmetry Space Group: P 21 21 21
R_factor 0.172 R_Free 0.190
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.519 61.653 95.122 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.35 Å
ligand ACT, NAP, P6G enzyme Oxidoreductase E.C.1.1.1.62 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • NADP-retinol dehydrogenase a...


  • Primary referenceStructure-based inhibitor design for an enzyme that binds different steroids: a potent inhibitor for human type 5 17beta-hydroxysteroid dehydrogenase., Qiu W, Zhou M, Mazumdar M, Azzi A, Ghanmi D, Luu-The V, Labrie F, Lin SX, J Biol Chem. 2007 Mar 16;282(11):8368-79. Epub 2006 Dec 13. PMID:17166832
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (66 Kb) [Save to disk]
  • Biological Unit Coordinates (2fgb.pdb1.gz) 60 Kb
  • LPC: Ligand-Protein Contacts for 2FGB
  • CSU: Contacts of Structural Units for 2FGB
  • Likely Quarternary Molecular Structure file(s) for 2FGB
  • Structure Factors (508 Kb)
  • Retrieve 2FGB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2FGB from S2C, [Save to disk]
  • Re-refined 2fgb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2FGB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2FGB
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2FGB, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2fgb_A] [2fgb]
  • SWISS-PROT database: [P42330]
  • Domain organization of [AK1C3_HUMAN] by SWISSPFAM
  • Other resources with information on 2FGB
  • Community annotation for 2FGB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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