2FGI Transferase date Sep 15, 1998
title Crystal Structure Of The Tyrosine Kinase Domain Of Fgf Recep Complex With Inhibitor Pd173074
authors M.Mohammadi, S.Froum, J.M.Hamby, M.Schroeder, R.L.Panek, G.H.Lu, A.V.Eliseenkova, D.Green, J.Schlessinger, S.R.Hubbard
compound source
Molecule: Protein (Fibroblast Growth Factor (Fgf) Receptor
Chain: A, B
Fragment: Tyrosine Kinase Domain
Synonym: Fgfr1k
Ec: 2.7.1.112
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: Sf9
Cellular_location: Cytoplasm
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector: Baculovirus
symmetry Space Group: C 1 2 1
R_factor 0.204 R_Free 0.264
crystal
cell
length a length b length c angle alpha angle beta angle gamma
208.790 57.380 66.180 90.00 107.55 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand PD1 BindingDB enzyme Transferase E.C.2.7.1.112 BRENDA
related structures by homologous chain: 1FGI
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structure of an angiogenesis inhibitor bound to the FGF receptor tyrosine kinase domain., Mohammadi M, Froum S, Hamby JM, Schroeder MC, Panek RL, Lu GH, Eliseenkova AV, Green D, Schlessinger J, Hubbard SR, EMBO J 1998 Oct 15;17(20):5896-904. PMID:9774334
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (96 Kb) [Save to disk]
  • Biological Unit Coordinates (2fgi.pdb1.gz) 91 Kb
  • LPC: Ligand-Protein Contacts for 2FGI
  • CSU: Contacts of Structural Units for 2FGI
  • Likely Quarternary Molecular Structure file(s) for 2FGI
  • Structure Factors (212 Kb)
  • Retrieve 2FGI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2FGI from S2C, [Save to disk]
  • Re-refined 2fgi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2FGI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2FGI
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2FGI, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d2fgia_, region A [Jmol] [rasmolscript] [script source]
        - Domain d2fgib_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2fgi_A] [2fgi] [2fgi_B]
  • SWISS-PROT database: [P11362]
  • Belongs to the basigin (basigin) family according to TCDB.
  • Domain organization of [FGFR1_HUMAN] by SWISSPFAM
  • Domain found in 2FGI: [TyrKc ] by SMART
  • Other resources with information on 2FGI
  • Community annotation for 2FGI at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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