2FGV Hydrolase date Dec 22, 2005
title X-Ray Crystal Structure Of Hiv-1 Protease T80n Variant In Co The Inhibitor Saquinavir Used To Explore The Role Of Invari In Hiv-1 Protease Structure, Function, And Viral Infectivit
authors J.E.Foulkes, M.Prabu-Jeyabalan, D.Cooper, C.A.Schiffer
compound source
Molecule: Protease
Chain: A, B
Synonym: Retropepsin, Pr
Ec: 3.4.23.16
Engineered: Yes
Mutation: Yes
Organism_scientific: Human Immunodeficiency Virus 1
Organism_taxid: 11676
Strain: Sf2
Gene: Gag
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Tap106
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pxc35
symmetry Space Group: P 21 21 21
R_factor 0.171 R_Free 0.197
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.520 58.180 61.520 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand ASN, DIQ, HPH, NTB, PO4, QNC enzyme Hydrolase E.C.3.4.23.16 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceRole of invariant Thr80 in human immunodeficiency virus type 1 protease structure, function, and viral infectivity., Foulkes JE, Prabu-Jeyabalan M, Cooper D, Henderson GJ, Harris J, Swanstrom R, Schiffer CA, J Virol. 2006 Jul;80(14):6906-16. PMID:16809296
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (45 Kb) [Save to disk]
  • Biological Unit Coordinates (2fgv.pdb1.gz) 37 Kb
  • LPC: Ligand-Protein Contacts for 2FGV
  • CSU: Contacts of Structural Units for 2FGV
  • Likely Quarternary Molecular Structure file(s) for 2FGV
  • Retrieve 2FGV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2FGV from S2C, [Save to disk]
  • View 2FGV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2FGV
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2FGV, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2fgv_A] [2fgv] [2fgv_B]
  • SWISS-PROT database: [P03369]
  • Domain organization of [POL_HV1A2] by SWISSPFAM
  • Other resources with information on 2FGV
  • Community annotation for 2FGV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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