2FJ7	Structural Protein Dna	date	Dec 31, 2005
title	Crystal Structure Of Nucleosome Core Particle Containing A P (Da.Dt) Sequence Element
authors	Y.Bao, C.L.White, K.Luger
compound		source
Molecule: 147 Bp Dna Containing 16 Bp Poly Da Element Chain: I Engineered: Yes		Synthetic: Yes
Molecule: 147 Bp Dna Containing 16 Bp Poly Dt Element Chain: J Engineered: Yes		Synthetic: Yes
Molecule: Histone H3 Chain: A, E Engineered: Yes		Organism_scientific: Xenopus Laevis Organism_common: African Clawed Frog Organism_taxid: 8355 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Histone H4 Chain: B, F Engineered: Yes		Organism_scientific: Xenopus Laevis Organism_common: African Clawed Frog Organism_taxid: 8355 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Histone H2a Chain: C, G Engineered: Yes		Organism_scientific: Xenopus Laevis Organism_common: African Clawed Frog Organism_taxid: 8355 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Histone H2b Chain: D, H Engineered: Yes		Organism_scientific: Xenopus Laevis Organism_common: African Clawed Frog Organism_taxid: 8355 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 21 21 21	R_factor 0.280 R_Free 0.350
crystal cell	length a length b length c angle alpha angle beta angle gamma 104.918 109.598 177.969 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.20 Å
Gene Ontology	Chain Function Process Component A, E C, G F, B H, D
Primary reference	Nucleosome core particles containing a poly(dA.dT) sequence element exhibit a locally distorted DNA structure., Bao Y, White CL, Luger K, J Mol Biol. 2006 Aug 25;361(4):617-24. Epub 2006 Jul 5. PMID:16860337

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (222 Kb) [Save to disk] Biological Unit Coordinates (2fj7.pdb1.gz) 215 Kb CSU: Contacts of Structural Units for 2FJ7 Likely Quarternary Molecular Structure file(s) for 2FJ7 Structure Factors (704 Kb) Retrieve 2FJ7 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2FJ7 from S2C, [Save to disk] Re-refined 2fj7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2FJ7 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2FJ7

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2FJ7, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2fj7_G] [2fj7_C] [2fj7_I] [2fj7] [2fj7_E] [2fj7_F] [2fj7_D] [2fj7_A] [2fj7_H] [2fj7_J] [2fj7_B] SWISS-PROT database: [P06897] [P02281] [P84233] [P62799] Domain organization of [H2A1_XENLA] [H2B11_XENLA] [H32_XENLA] [H4_XENLA] by SWISSPFAM Domains found in 2FJ7: [H2A] [H2B] [H3] [H4 ] by SMART

Other resources with information on 2FJ7

Community annotation for 2FJ7 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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