2FJG	Hormone Growth Factor Immune System	date	Jan 02, 2006
title	Structure Of The G6 Fab, A Phage Derived Fab Fragment, In Co Vegf
authors	C.Wiesmann
compound		source
Molecule: Vascular Endothelial Growth Factor A Chain: V, W Fragment: Receptor Binding Domain (Residues 34-135) Synonym: Vegf-A, Vascular Permeability Factor, Vpf Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pb2105
Molecule: Fab Light Chain Chain: L, A Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pw0276
Molecule: Fab Heavy Chain Chain: H, B Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pw0276
symmetry	Space Group: P 31 2 1	R_factor 0.199 R_Free 0.239
crystal cell	length a length b length c angle alpha angle beta angle gamma 117.880 117.880 212.562 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.80 Å
ligand	SO4	enzyme
Gene Ontology	Chain Function Process Component W, V
Primary reference	Structure-function studies of two synthetic anti-vascular endothelial growth factor Fabs and comparison with the Avastin Fab., Fuh G, Wu P, Liang WC, Ultsch M, Lee CV, Moffat B, Wiesmann C, J Biol Chem. 2006 Mar 10;281(10):6625-31. Epub 2005 Dec 22. PMID:16373345

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (170 Kb) [Save to disk] Biological Unit Coordinates (2fjg.pdb1.gz) 161 Kb Biological Unit Coordinates (2fjg.pdb2.gz) 317 Kb LPC: Ligand-Protein Contacts for 2FJG CSU: Contacts of Structural Units for 2FJG Likely Quarternary Molecular Structure file(s) for 2FJG Structure Factors (318 Kb) Retrieve 2FJG in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2FJG from S2C, [Save to disk] Re-refined 2fjg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2FJG in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2FJG

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2FJG, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2fjg_H] [2fjg] [2fjg_W] [2fjg_B] [2fjg_A] [2fjg_L] [2fjg_V] SWISS-PROT database: [P15692] Domain organization of [VEGFA_HUMAN] by SWISSPFAM Domains found in 2FJG: [IG_like] [IGv] [PDGF ] by SMART

Other resources with information on 2FJG

Community annotation for 2FJG at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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