2FJM Hydrolase date Jan 03, 2006
title The Structure Of Phosphotyrosine Phosphatase 1b In Complex W Compound 2
authors E.Asante-Appiah, S.Patel, C.Desponts, J.M.Taylor, C.Lau, C.Dufres M.Therien, R.Friesen, J.W.Becker, Y.Leblanc, G.Scapin
compound source
Molecule: Tyrosine-Protein Phosphatase, Non-Receptor Type 1
Chain: A, B
Fragment: Catalytic Domain (Residues 1-298)
Synonym: Protein-Tyrosine Phosphatase 1b, Ptp-1b
Ec: 3.1.3.48
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ptpn1, Ptp1b
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
symmetry Space Group: P 21 21 21
R_factor 0.192 R_Free 0.217
crystal
cell
length a length b length c angle alpha angle beta angle gamma
86.431 86.621 139.193 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand 073, CL, MG BindingDB enzyme Hydrolase E.C.3.1.3.48 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceConformation-assisted inhibition of protein-tyrosine phosphatase-1B elicits inhibitor selectivity over T-cell protein-tyrosine phosphatase., Asante-Appiah E, Patel S, Desponts C, Taylor JM, Lau C, Dufresne C, Therien M, Friesen R, Becker JW, Leblanc Y, Kennedy BP, Scapin G, J Biol Chem. 2006 Mar 24;281(12):8010-5. Epub 2006 Jan 6. PMID:16407290
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (107 Kb) [Save to disk]
  • Biological Unit Coordinates (2fjm.pdb1.gz) 52 Kb
  • Biological Unit Coordinates (2fjm.pdb2.gz) 52 Kb
  • LPC: Ligand-Protein Contacts for 2FJM
  • CSU: Contacts of Structural Units for 2FJM
  • Likely Quarternary Molecular Structure file(s) for 2FJM
  • Structure Factors (884 Kb)
  • Retrieve 2FJM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2FJM from S2C, [Save to disk]
  • Re-refined 2fjm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2FJM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2FJM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2FJM, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2fjm_A] [2fjm] [2fjm_B]
  • SWISS-PROT database: [P18031]
  • Domain organization of [PTN1_HUMAN] by SWISSPFAM
  • Domains found in 2FJM: [PTPc] [PTPc_DSPc ] by SMART
  • Other resources with information on 2FJM
  • Community annotation for 2FJM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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