2FKP Isomerase date Jan 05, 2006
title The Mutant G127c-T313c Of Deinococcus Radiodurans N-Acylamin Racemase
authors W.C.Wang, W.C.Chiu
compound source
Molecule: N-Acylamino Acid Racemase
Chain: A, B, C, D
Ec: 5.1.1.10
Engineered: Yes
Mutation: Yes
Organism_scientific: Deinococcus Radiodurans
Organism_taxid: 1299
Strain: Ccrc 12827
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Jm109
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pqe30
symmetry Space Group: P 4
R_factor 0.182 R_Free 0.227
crystal
cell
length a length b length c angle alpha angle beta angle gamma
116.129 116.129 120.536 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand
enzyme Isomerase E.C.5.1.1.10 BRENDA
note 2FKP supersedes 2BAH
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (238 Kb) [Save to disk]
  • Biological Unit Coordinates (2fkp.pdb1.gz) 464 Kb
  • Biological Unit Coordinates (2fkp.pdb2.gz) 461 Kb
  • CSU: Contacts of Structural Units for 2FKP
  • Likely Quarternary Molecular Structure file(s) for 2FKP
  • Structure Factors (1988 Kb)
  • Retrieve 2FKP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2FKP from S2C, [Save to disk]
  • Re-refined 2fkp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2FKP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2FKP
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2FKP, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2fkp_A] [2fkp_D] [2fkp_C] [2fkp_B] [2fkp]
  • SWISS-PROT database: [Q9RYA6]
  • Domain organization of [Q9RYA6_DEIRA] by SWISSPFAM
  • Domain found in 2FKP: [MR_MLE ] by SMART
  • Other resources with information on 2FKP
  • Community annotation for 2FKP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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