2FL5 Immune System date Jan 05, 2006
title Cofactor-Containing Antibodies: Crystal Structure Of The Ori Yellow Antibody
authors X.Zhu, I.A.Wilson
compound source
Molecule: Immunoglobulin Igg1 Lambda Light Chain
Chain: L, A, C, E
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Immunoglobulin Igg1 Heavy Chain
Chain: H, B, D, F
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 21 21 21
R_factor 0.240 R_Free 0.290
crystal
cell
length a length b length c angle alpha angle beta angle gamma
100.592 111.105 188.454 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.00 Å
ligand RBF enzyme
Primary referenceCofactor-containing antibodies: Crystal structure of the original yellow antibody., Zhu X, Wentworth P Jr, Kyle RA, Lerner RA, Wilson IA, Proc Natl Acad Sci U S A. 2006 Mar 7;103(10):3581-5. Epub 2006 Feb 28. PMID:16537445
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (269 Kb) [Save to disk]
  • Biological Unit Coordinates (2fl5.pdb1.gz) 70 Kb
  • Biological Unit Coordinates (2fl5.pdb2.gz) 70 Kb
  • Biological Unit Coordinates (2fl5.pdb3.gz) 70 Kb
  • Biological Unit Coordinates (2fl5.pdb4.gz) 70 Kb
  • LPC: Ligand-Protein Contacts for 2FL5
  • CSU: Contacts of Structural Units for 2FL5
  • Likely Quarternary Molecular Structure file(s) for 2FL5
  • Structure Factors (575 Kb)
  • Retrieve 2FL5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2FL5 from S2C, [Save to disk]
  • Re-refined 2fl5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2FL5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2FL5
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2FL5, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2fl5_E] [2fl5] [2fl5_L] [2fl5_H] [2fl5_A] [2fl5_F] [2fl5_C] [2fl5_D] [2fl5_B]
  • SWISS-PROT database: [P80419] [P01861] [Q5FWF9]
  • Domain organization of [HV322_HUMAN] [IGHG4_HUMAN] [Q5FWF9_HUMAN] by SWISSPFAM
  • Domains found in 2FL5: [IG_like] [IGv ] by SMART
    • Other resources with information on 2FL5
  • Community annotation for 2FL5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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