2FM2 HCV NS3-4A protease domain complexed with a ketoamide inhibitor, SCH446211 date
authors Yi, M., Tong, X., Skelton, A., Chase, R., Chen, T., Prongay, A., Bogen, S.L., Saksena, A.K., Njoroge, F.G., Veselenak, R.L., Pyles, R.B., Bourne, N., Malcolm, B.A., Lemon, S.M.
compound source
symmetry
R_factor
R_Free 0.26
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.70
ligand 3BC, BME, ZN BindingDB enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C


D, B


Primary referenceMutations conferring resistance to SCH6, a novel hepatitis C virus NS3/4A protease inhibitor. Reduced RNA replication fitness and partial rescue by second-site mutations., Yi M, Tong X, Skelton A, Chase R, Chen T, Prongay A, Bogen SL, Saksena AK, Njoroge FG, Veselenak RL, Pyles RB, Bourne N, Malcolm BA, Lemon SM, J Biol Chem. 2006 Mar 24;281(12):8205-15. Epub 2005 Dec 13. PMID:16352601
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (66 Kb) [Save to disk]
  • Biological Unit Coordinates (2fm2.pdb1.gz) 60 Kb
  • LPC: Ligand-Protein Contacts for 2FM2
  • CSU: Contacts of Structural Units for 2FM2
  • Likely Quarternary Molecular Structure file(s) for 2FM2
  • Structure Factors (356 Kb)
  • Retrieve 2FM2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2FM2 from S2C, [Save to disk]
  • Re-refined 2fm2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2FM2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2FM2
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2FM2, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2fm2_B] [2fm2_C] [2fm2_D] [2fm2] [2fm2_A]
  • SWISS-PROT database: [Q9ELS8]
  • Domain organization of [Q9ELS8_9HEPC] by SWISSPFAM
    • Other resources with information on 2FM2
  • Community annotation for 2FM2 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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