2FME	Cell Cycle	date	Jan 09, 2006
title	Crystal Structure Of The Mitotic Kinesin Eg5 (Ksp) In Comple Adp And (R)-4-(3-Hydroxyphenyl)-N,N,7,8-Tetramethyl-3,4- Dihydroisoquinoline-2(1h)-Carboxamide
authors	S.Sheriff
compound		source
Molecule: Kinesin-Like Protein Kif11 Chain: A, B Fragment: Kinesin-Motor Domain (Residues 1-368) Synonym: Kinesin-Related Motor Protein Eg5, Kinesin-Like Sp Protein Hksp, Thyroid Receptor Interacting Protein 5, Trip5 Like Protein 1; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Kif11, Eg5, Knsl1 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28n
symmetry	Space Group: C 1 2 1	R_factor 0.280 R_Free 0.305
crystal cell	length a length b length c angle alpha angle beta angle gamma 159.800 80.000 69.200 90.00 96.50 90.00
method	X-Ray Diffraction	resolution	2.10 Å
ligand	3QC, ADP, MG BindingDB	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Inhibitors of human mitotic kinesin Eg5: characterization of the 4-phenyl-tetrahydroisoquinoline lead series., Tarby CM, Kaltenbach RF 3rd, Huynh T, Pudzianowski A, Shen H, Ortega-Nanos M, Sheriff S, Newitt JA, McDonnell PA, Burford N, Fairchild CR, Vaccaro W, Chen Z, Borzilleri RM, Naglich J, Lombardo LJ, Gottardis M, Trainor GL, Roussell DL, Bioorg Med Chem Lett. 2006 Apr 15;16(8):2095-100. Epub 2006 Feb 3. PMID:16458511

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (112 Kb) [Save to disk] Biological Unit Coordinates (2fme.pdb1.gz) 54 Kb Biological Unit Coordinates (2fme.pdb2.gz) 55 Kb LPC: Ligand-Protein Contacts for 2FME CSU: Contacts of Structural Units for 2FME Likely Quarternary Molecular Structure file(s) for 2FME Structure Factors (388 Kb) Retrieve 2FME in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2FME from S2C, [Save to disk] Re-refined 2fme structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2FME in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2FME

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2FME, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2fme_B] [2fme] [2fme_A] SWISS-PROT database: [P52732] Domain organization of [KIF11_HUMAN] by SWISSPFAM Domain found in 2FME: [KISc ] by SMART

Other resources with information on 2FME

Community annotation for 2FME at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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