2FNJ Protein Transport Signaling Protein date Jan 11, 2006
title Crystal Structure Of A B30.2spry Domain-Containing Protein In Complex With Elongin B And Elongin C
authors J.S.Woo, B.H.Oh
compound source
Molecule: Cg2944-Pf, Isoform F
Chain: A
Fragment: Residues 28-253
Synonym: Gustavus
Engineered: Yes
Organism_scientific: Drosophila Melanogaster
Organism_common: Fruit Fly
Organism_taxid: 7227
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Transcription Elongation Factor B Polypeptide 2
Chain: B
Synonym: Rna Polymerase II Transcription Factor Siii Subuni P18, Elongin B, Elob, Elongin 18 Kda Subunit;
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Transcription Elongation Factor B Polypeptide 1
Chain: C
Fragment: Residues 17-112
Synonym: Rna Polymerase II Transcription Factor Siii Subuni P15, Elongin C, Eloc, Elongin 15 Kda Subunit, Stromal Membr Associated Protein Smap1b Homolog;
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.218 R_Free 0.247
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.308 82.489 118.966 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
Gene
Ontology
ChainFunctionProcessComponent
B


C


Primary referenceStructural and functional insights into the B30.2/SPRY domain., Woo JS, Imm JH, Min CK, Kim KJ, Cha SS, Oh BH, EMBO J. 2006 Feb 23;. PMID:16498413
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (74 Kb) [Save to disk]
  • Biological Unit Coordinates (2fnj.pdb1.gz) 70 Kb
  • CSU: Contacts of Structural Units for 2FNJ
  • Likely Quarternary Molecular Structure file(s) for 2FNJ
  • Structure Factors (549 Kb)
  • Retrieve 2FNJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2FNJ from S2C, [Save to disk]
  • Re-refined 2fnj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2FNJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2FNJ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2FNJ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2fnj_C] [2fnj] [2fnj_A] [2fnj_B]
  • SWISS-PROT database: [A1Z6E0] [P62869] [P83940]
  • Domain organization of [A1Z6E0_DROME] [ELOB_MOUSE] [ELOC_MOUSE] by SWISSPFAM
  • Domains found in 2FNJ: [SPRY] [Skp1] [UBQ ] by SMART
  • Other resources with information on 2FNJ
  • Community annotation for 2FNJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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