2FPI Ligase date Jan 16, 2006
title Crystal Structure Of Pig Gtp-Specific Succinyl-Coa Synthetas Polyethylene Glycol
authors M.E.Fraser
compound source
Molecule: Succinyl-Coa Ligase [Gdp-Forming] Alpha-Chain, Mitochondrial;
Chain: A
Synonym: Succinyl-Coa Synthetase, Alpha Chain, Scs-Alpha
Ec: 6.2.1.4
Engineered: Yes
Organism_scientific: Sus Scrofa
Organism_common: Pig
Organism_taxid: 9823
Gene: Suclg1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pt7-7

Molecule: Succinyl-Coa Ligase [Gdp-Forming] Beta-Chain, Mitochondrial;
Chain: B
Synonym: Succinyl-Coa Synthetase, Betag Chain, Scs-Betag, G Specific Succinyl-Coa Synthetase Beta Subunit, Fragment;
Ec: 6.2.1.4
Engineered: Yes

Organism_scientific: Sus Scrofa
Organism_common: Pig
Organism_taxid: 9823
Gene: Suclg2
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pt7-7
symmetry Space Group: P 65
R_factor 0.215 R_Free 0.310
crystal
cell
length a length b length c angle alpha angle beta angle gamma
135.790 135.790 77.150 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.70 Å
ligand NEP, SO4 enzyme Ligase E.C.6.2.1.4 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceInteractions of GTP with the ATP-grasp Domain of GTP-specific Succinyl-CoA Synthetase., Fraser ME, Hayakawa K, Hume MS, Ryan DG, Brownie ER, J Biol Chem. 2006 Apr 21;281(16):11058-65. Epub 2006 Feb 15. PMID:16481318
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (113 Kb) [Save to disk]
  • Biological Unit Coordinates (2fpi.pdb1.gz) 108 Kb
  • LPC: Ligand-Protein Contacts for 2FPI
  • CSU: Contacts of Structural Units for 2FPI
  • Likely Quarternary Molecular Structure file(s) for 2FPI
  • Structure Factors (204 Kb)
  • Retrieve 2FPI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2FPI from S2C, [Save to disk]
  • Re-refined 2fpi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2FPI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2FPI
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2FPI, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2fpi_B] [2fpi] [2fpi_A]
  • SWISS-PROT database: [O19069] [P53590]
  • Domain organization of [SUCA_PIG] [SUCB2_PIG] by SWISSPFAM
  • Domain found in 2FPI: [CoA_binding ] by SMART
  • Other resources with information on 2FPI
  • Community annotation for 2FPI at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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