2FPO	Transferase	date	Jan 16, 2006
title	Putative Methyltransferase Yhhf From Escherichia Coli.
authors	J.Osipiuk, Y.Kim, R.Sanishvili, T.Skarina, E.Evdokimova, A.Savche A.Edwards, A.Joachimiak, Midwest Center For Structural Genomi
compound		source
Molecule: Methylase Yhhf Chain: A, B, C, D, E, F Ec: 2.1.1.- Engineered: Yes		Organism_scientific: Escherichia Coli Organism_taxid: 83333 Strain: K12 Gene: Yhhf Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet15b
symmetry	Space Group: C 1 2 1	R_factor 0.183 R_Free 0.217
crystal cell	length a length b length c angle alpha angle beta angle gamma 70.504 96.912 193.961 90.00 92.21 90.00
method	X-Ray Diffraction	resolution	2.05 Å
ligand	CL, EDO, MSE	enzyme	Transferase E.C.2.1.1 BRENDA
Gene Ontology	Chain Function Process Component F, A, D, C, E, B
Primary reference	Methyltransferase that modifies guanine 966 of the 16 S rRNA: functional identification and tertiary structure., Lesnyak DV, Osipiuk J, Skarina T, Sergiev PV, Bogdanov AA, Edwards A, Savchenko A, Joachimiak A, Dontsova OA, J Biol Chem. 2007 Feb 23;282(8):5880-7. Epub 2006 Dec 21. PMID:17189261

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (184 Kb) [Save to disk] Biological Unit Coordinates (2fpo.pdb1.gz) 33 Kb Biological Unit Coordinates (2fpo.pdb2.gz) 32 Kb Biological Unit Coordinates (2fpo.pdb3.gz) 32 Kb Biological Unit Coordinates (2fpo.pdb4.gz) 32 Kb Biological Unit Coordinates (2fpo.pdb5.gz) 32 Kb Biological Unit Coordinates (2fpo.pdb6.gz) 32 Kb LPC: Ligand-Protein Contacts for 2FPO CSU: Contacts of Structural Units for 2FPO Likely Quarternary Molecular Structure file(s) for 2FPO Structure Factors (966 Kb) Retrieve 2FPO in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2FPO from S2C, [Save to disk] Re-refined 2fpo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2FPO in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2FPO

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2FPO, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2fpo_E] [2fpo_C] [2fpo_B] [2fpo] [2fpo_A] [2fpo_F] [2fpo_D] SWISS-PROT database: [P0ADX9] Domain organization of [RSMD_ECOLI] by SWISSPFAM

Other resources with information on 2FPO

Community annotation for 2FPO at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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