2FQ3 Transcription date Jan 17, 2006
title Structure And Function Of The Swirm Domain, A Conserved Prot Found In Chromatin Regulatory Complexes
authors G.Da, J.Lenkart, K.Zhao, R.Shiekhattar, B.R.Cairns, R.Marmorstein
compound source
Molecule: Transcription Regulatory Protein Swi3
Chain: A
Fragment: Swirm Domain
Synonym: Swisnf Complex Component Swi3, Transcription Fact
Engineered: Yes
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Gene: Swi3, Tye2
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Prset-A
symmetry Space Group: P 21 21 21
R_factor 0.207 R_Free 0.213
crystal
cell
length a length b length c angle alpha angle beta angle gamma
44.226 44.309 48.792 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.40 Å
Primary referenceStructure and function of the SWIRM domain, a conserved protein module found in chromatin regulatory complexes., Da G, Lenkart J, Zhao K, Shiekhattar R, Cairns BR, Marmorstein R, Proc Natl Acad Sci U S A. 2006 Feb 14;103(7):2057-62. Epub 2006 Feb 3. PMID:16461455
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (21 Kb) [Save to disk]
  • Biological Unit Coordinates (2fq3.pdb1.gz) 17 Kb
  • CSU: Contacts of Structural Units for 2FQ3
  • Likely Quarternary Molecular Structure file(s) for 2FQ3
  • Structure Factors (338 Kb)
  • Retrieve 2FQ3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2FQ3 from S2C, [Save to disk]
  • Re-refined 2fq3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2FQ3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2FQ3
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2FQ3, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2fq3_A] [2fq3]
  • SWISS-PROT database: [P32591]
  • Domain organization of [SWI3_YEAST] by SWISSPFAM
  • Other resources with information on 2FQ3
  • Community annotation for 2FQ3 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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