2FRY Protein Binding date Jan 20, 2006
title Solution Structure Of The Third Sh3 Domain Of Human Nck2 Ada Protein
authors J.Liu
compound source
Molecule: Cytoplasmic Protein Nck2
Chain: A
Fragment: Sh3_3
Synonym: Nck Adaptor Protein 2, Sh2sh3 Adaptor Protein Nck Nck-2;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet32-A
methodSolution NMR
note 2FRY is a representative structure
Primary referenceStructural Insight into the Binding Diversity between the Human Nck2 SH3 Domains and Proline-Rich Proteins(,)., Liu J, Li M, Ran X, Fan JS, Song J, Biochemistry. 2006 Jun 13;45(23):7171-84. PMID:16752908
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (163 Kb) [Save to disk]
  • Biological Unit Coordinates (2fry.pdb1.gz) 16 Kb
  • CSU: Contacts of Structural Units for 2FRY
  • Original NMR restraints for 2FRY from PDB
  • Retrieve 2FRY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2FRY from S2C, [Save to disk]
    • View 2FRY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2FRY
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2FRY, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2fry_A] [2fry]
  • SWISS-PROT database: [O43639]
  • Domain organization of [NCK2_HUMAN] by SWISSPFAM
  • Domain found in 2FRY: [SH3 ] by SMART
    • Other resources with information on 2FRY
  • Community annotation for 2FRY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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