2FTY	Hydrolase	date	Jan 25, 2006
title	Crystal Structure Of Dihydropyrimidinase From Saccharomyces
authors	D.Dobritzsch, B.Lohkamp
compound		source
Molecule: Dihydropyrimidinase Chain: A, B, C, D Ec: 3.5.2.2 Engineered: Yes		Organism_scientific: Lachancea Kluyveri Organism_taxid: 4934 Gene: Pyd2 Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: P343
symmetry	Space Group: P 1 21 1	R_factor 0.217 R_Free 0.274
crystal cell	length a length b length c angle alpha angle beta angle gamma 91.428 73.320 162.181 90.00 91.59 90.00
method	X-Ray Diffraction	resolution	2.40 Å
ligand	KCX, ZN	enzyme	Hydrolase E.C.3.5.2.2 BRENDA
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	The crystal structures of dihydropyrimidinases reaffirm the close relationship between cyclic amidohydrolases and explain their substrate specificity., Lohkamp B, Andersen B, Piskur J, Dobritzsch D, J Biol Chem. 2006 May 12;281(19):13762-76. Epub 2006 Mar 3. PMID:16517602

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (342 Kb) [Save to disk] Biological Unit Coordinates (2fty.pdb1.gz) 331 Kb LPC: Ligand-Protein Contacts for 2FTY CSU: Contacts of Structural Units for 2FTY Likely Quarternary Molecular Structure file(s) for 2FTY Structure Factors (1568 Kb) Retrieve 2FTY in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2FTY from S2C, [Save to disk] Re-refined 2fty structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2FTY in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2FTY

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2FTY, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2fty_D] [2fty] [2fty_A] [2fty_B] [2fty_C] SWISS-PROT database: [Q9P903] Domain organization of [DPYS_SACKL] by SWISSPFAM

Other resources with information on 2FTY

Community annotation for 2FTY at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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