2FUG Oxidoreductase date Jan 26, 2006
title Crystal Structure Of The Hydrophilic Domain Of Respiratory C From Thermus Thermophilus
authors L.A.Sazanov, P.Hinchliffe
compound source
Molecule: Nadh-Quinone Oxidoreductase Chain 1
Chain: 1, A, J, S
Fragment: Hydrophilic Domain
Synonym: Nadh Dehydrogenase I, Chain 1, Ndh-1, Chain 1
Ec: 1.6.99.5
 Organism_scientific: Thermus Thermophilus
Organism_taxid: 300852
Strain: Hb8

Molecule: Nadh-Quinone Oxidoreductase Chain 2
Chain: 2, B, K, T
Synonym: Nadh Dehydrogenase I, Chain 2, Ndh-1, Chain 2
Ec: 1.6.99.5
Organism_scientific: Thermus Thermophilus
Organism_taxid: 300852
Strain: Hb8

Molecule: Nadh-Quinone Oxidoreductase Chain 3
Chain: 3, C, L, U
Synonym: Nadh Dehydrogenase I, Chain 3, Ndh-1, Chain 3
Ec: 1.6.99.5
Organism_scientific: Thermus Thermophilus
Organism_taxid: 300852
Strain: Hb8

Molecule: Nadh-Quinone Oxidoreductase Chain 4
Chain: 4, D, M, V
Synonym: Nadh Dehydrogenase I, Chain 4, Ndh-1, Chain 4
Ec: 1.6.99.5
Organism_scientific: Thermus Thermophilus
Organism_taxid: 300852
Strain: Hb8

Molecule: Nadh-Quinone Oxidoreductase Chain 5
Chain: 5, E, N, W
Synonym: Nadh Dehydrogenase I, Chain 5, Ndh-1, Chain 5
Ec: 1.6.99.5
Organism_scientific: Thermus Thermophilus
Organism_taxid: 300852
Strain: Hb8

Molecule: Nadh-Quinone Oxidoreductase Chain 6
Chain: 6, F, O, X
Synonym: Nadh Dehydrogenase I, Chain 6, Ndh-1, Chain 6
Ec: 1.6.99.5
Organism_scientific: Thermus Thermophilus
Organism_taxid: 300852
Strain: Hb8

Molecule: Nadh-Quinone Oxidoreductase Chain 9
Chain: 9, G, P, Y
Synonym: Nadh Dehydrogenase I, Chain 9, Ndh-1, Chain 9
Ec: 1.6.99.5
Organism_scientific: Thermus Thermophilus
Organism_taxid: 300852
Strain: Hb8

Molecule: Conserved Hypothetical Protein
Chain: 7, H, Q, Z
Organism_scientific: Thermus Thermophilus
Organism_taxid: 300852
Strain: Hb8
symmetry Space Group: P 1 21 1
R_factor 0.265 R_Free 0.298
crystal
cell
length a length b length c angle alpha angle beta angle gamma
135.080 266.112 201.731 90.00 104.71 90.00
method X-Ray Diffractionresolution 3.30 Å
ligand FES, FMN, SF4 enzyme Oxidoreductase E.C.1.6.99.5 BRENDA
note 2FUG (Molecule of the Month:pdb144)
Gene
Ontology
ChainFunctionProcessComponent
7, Z, Q, H


C, L, 3, U


F, 6, O, X


N, E, W, 5


S, 1, A, J


T, K, 2, B


V, M, 4, D


Y, P, 9, G


Primary referenceStructure of the hydrophilic domain of respiratory complex I from Thermus thermophilus., Sazanov LA, Hinchliffe P, Science. 2006 Mar 10;311(5766):1430-6. Epub 2006 Feb 9. PMID:16469879
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1515 Kb) [Save to disk]
  • Biological Unit Coordinates (2fug.pdb1.gz) 390 Kb
  • Biological Unit Coordinates (2fug.pdb2.gz) 389 Kb
  • Biological Unit Coordinates (2fug.pdb3.gz) 391 Kb
  • Biological Unit Coordinates (2fug.pdb4.gz) 390 Kb
  • LPC: Ligand-Protein Contacts for 2FUG
  • CSU: Contacts of Structural Units for 2FUG
  • Likely Quarternary Molecular Structure file(s) for 2FUG
  • Structure Factors (1766 Kb)
  • Retrieve 2FUG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2FUG from S2C, [Save to disk]
  • Re-refined 2fug structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2FUG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2FUG
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2FUG, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2fug_4] [2fug_7] [2fug_M] [2fug_W] [2fug_B] [2fug_9] [2fug_A] [2fug_D] [2fug_3] [2fug_G] [2fug_5] [2fug_Y] [2fug_H] [2fug_T] [2fug_F] [2fug_N] [2fug_V] [2fug_U] [2fug_S] [2fug_2] [2fug_J] [2fug] [2fug_O] [2fug_Z] [2fug_6] [2fug_C] [2fug_P] [2fug_Q] [2fug_1] [2fug_X] [2fug_K] [2fug_L] [2fug_E]
  • SWISS-PROT database: [Q5SKZ7] [Q56222] [Q56221] [Q56223] [Q56220] [Q56219] [Q56218] [Q56224]
  • Belongs to the h(+) or na(+)-translocating nadh dehydrogenase (ndh) family according to TCDB.
  • Domain organization of [NQO15_THET8] [NQO1_THET8] [NQO2_THET8] [NQO3_THET8] [NQO4_THET8] [NQO5_THET8] [NQO6_THET8] [NQO9_THET8] by SWISSPFAM
  • Domains found in 2FUG: [Molybdop_Fe4S4] [NADH-G_4Fe-4S_3] [NADH_4Fe-4S ] by SMART
    • Other resources with information on 2FUG
  • Community annotation for 2FUG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science