2FUL Translation date Jan 27, 2006
title Crystal Structure Of The C-Terminal Domain Of S. Cerevisiae
authors Z.Wei, Y.Xue, H.Xu, W.Gong
compound source
Molecule: Eukaryotic Translation Initiation Factor 5
Chain: A, B, C, D, E, F
Fragment: Residues 236-412
Synonym: Eif-5
Engineered: Yes
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex4t-1
symmetry Space Group: P 1
R_factor 0.177 R_Free 0.205
crystal
cell
length a length b length c angle alpha angle beta angle gamma
44.849 64.536 108.916 88.60 86.57 74.93
method X-Ray Diffractionresolution 1.50 Å
ligand SO4 enzyme
Primary referenceCrystal Structure of the C-terminal Domain of S.cerevisiae eIF5., Wei Z, Xue Y, Xu H, Gong W, J Mol Biol. 2006 May 26;359(1):1-9. Epub 2006 Mar 31. PMID:16616930
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (188 Kb) [Save to disk]
  • Biological Unit Coordinates (2ful.pdb1.gz) 32 Kb
  • Biological Unit Coordinates (2ful.pdb2.gz) 31 Kb
  • Biological Unit Coordinates (2ful.pdb3.gz) 32 Kb
  • Biological Unit Coordinates (2ful.pdb4.gz) 32 Kb
  • Biological Unit Coordinates (2ful.pdb5.gz) 33 Kb
  • Biological Unit Coordinates (2ful.pdb6.gz) 32 Kb
  • LPC: Ligand-Protein Contacts for 2FUL
  • CSU: Contacts of Structural Units for 2FUL
  • Likely Quarternary Molecular Structure file(s) for 2FUL
  • Structure Factors (1258 Kb)
  • Retrieve 2FUL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2FUL from S2C, [Save to disk]
  • Re-refined 2ful structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2FUL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2FUL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2FUL, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ful_E] [2ful_C] [2ful_F] [2ful] [2ful_B] [2ful_A] [2ful_D]
  • SWISS-PROT database: [P38431]
  • Domain organization of [IF5_YEAST] by SWISSPFAM
  • Domain found in 2FUL: [eIF5C ] by SMART
  • Other resources with information on 2FUL
  • Community annotation for 2FUL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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