2FVC	Transferase	date	Jan 30, 2006
title	Crystal Structure Of Ns5b Bk Strain (Delta 24) In Complex Wi 1-Dioxo-2h-(1,2,4)-Benzothiadiazin-3-Yl)-4-Hydroxy-2(1h)-Qu
authors	N.O.Concha, A.Wonacott, O.Singh
compound		source
Molecule: Polyprotein Chain: A, B Engineered: Yes		Organism_scientific: Hepatitis C Virus Subtype 1b Organism_taxid: 31647 Strain: Bk Gene: Ns5b Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_vector: Pet21b
symmetry	Space Group: P 21 21 21	R_factor 0.206 R_Free 0.243
crystal cell	length a length b length c angle alpha angle beta angle gamma 85.500 105.200 126.400 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	888 BindingDB	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	3-(1,1-dioxo-2H-(1,2,4)-benzothiadiazin-3-yl)-4-hydroxy-2(1H)-quinolinones , potent inhibitors of hepatitis C virus RNA-dependent RNA polymerase., Tedesco R, Shaw AN, Bambal R, Chai D, Concha NO, Darcy MG, Dhanak D, Fitch DM, Gates A, Gerhardt WG, Halegoua DL, Han C, Hofmann GA, Johnston VK, Kaura AC, Liu N, Keenan RM, Lin-Goerke J, Sarisky RT, Wiggall KJ, Zimmerman MN, Duffy KJ, J Med Chem. 2006 Feb 9;49(3):971-83. PMID:16451063

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (191 Kb) [Save to disk] Biological Unit Coordinates (2fvc.pdb1.gz) 94 Kb Biological Unit Coordinates (2fvc.pdb2.gz) 95 Kb LPC: Ligand-Protein Contacts for 2FVC CSU: Contacts of Structural Units for 2FVC Likely Quarternary Molecular Structure file(s) for 2FVC Structure Factors (656 Kb) Retrieve 2FVC in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2FVC from S2C, [Save to disk] Re-refined 2fvc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2FVC in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2FVC

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2FVC, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2fvc] [2fvc_A] [2fvc_B] SWISS-PROT database: [Q99AU2] Domain organization of [Q99AU2_9HEPC] by SWISSPFAM

Other resources with information on 2FVC

Community annotation for 2FVC at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---