2FVD Transferase date Jan 30, 2006
title Cyclin Dependent Kinase 2 (Cdk2) With Diaminopyrimidine Inhi
authors R.L.Crowther, C.M.Lukacs, R.U.Kammlott
compound source
Molecule: Cell Division Protein Kinase 2
Chain: A
Synonym: P33 Protein Kinase
Ec: 2.7.1.37
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cdk2
Expression_system: Unidentified Baculovirus
Expression_system_taxid: 10469
symmetry Space Group: P 21 21 21
R_factor 0.207 R_Free 0.235
crystal
cell
length a length b length c angle alpha angle beta angle gamma
53.506 71.647 71.692 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.85 Å
ligand LIA BindingDB enzyme Transferase E.C.2.7.1.37 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDiscovery of [4-Amino-2-(1-methanesulfonylpiperidin-4-ylamino)pyrimidin-5-yl](2,3-diflu oro-6- methoxyphenyl)methanone (R547), a potent and selective cyclin-dependent kinase inhibitor with significant in vivo antitumor activity., Chu XJ, DePinto W, Bartkovitz D, So SS, Vu BT, Packman K, Lukacs C, Ding Q, Jiang N, Wang K, Goelzer P, Yin X, Smith MA, Higgins BX, Chen Y, Xiang Q, Moliterni J, Kaplan G, Graves B, Lovey A, Fotouhi N, J Med Chem. 2006 Nov 2;49(22):6549-60. PMID:17064073
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk]
  • Biological Unit Coordinates (2fvd.pdb1.gz) 50 Kb
  • LPC: Ligand-Protein Contacts for 2FVD
  • CSU: Contacts of Structural Units for 2FVD
  • Likely Quarternary Molecular Structure file(s) for 2FVD
  • Structure Factors (390 Kb)
  • Retrieve 2FVD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2FVD from S2C, [Save to disk]
  • Re-refined 2fvd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2FVD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2FVD
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2FVD, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2fvd_A] [2fvd]
  • SWISS-PROT database: [P24941]
  • Domain organization of [CDK2_HUMAN] by SWISSPFAM
  • Domain found in 2FVD: [S_TKc ] by SMART
  • Other resources with information on 2FVD
  • Community annotation for 2FVD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science