2FVJ	Signaling Protein	date	Jan 31, 2006
title	A Novel Anti-Adipogenic Partial Agonist Of Peroxisome Prolif Activated Receptor-Gamma (Pparg) Recruits Pparg-Coactivator (Pgc1a) But Potentiates Insulin Signaling In Vitro
authors	J.Benz, E.Burgermeister, A.Flament, A.Schnoebelen, M.Stihle, B.Gs A.Rufer, A.Ruf, B.Kuhn, H.P.Maerki, J.Mizrahi, E.Sebokova, E.Nies M.Meyer
compound		source
Molecule: Peroxisome Proliferator-Activated Receptor Gamma Chain: A Fragment: Ligand Binding Domain, Residues 207-477 Synonym: Ppar-Gamma Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Nuclear Receptor Coactivator 1 Chain: B Fragment: Coactivator Fragment Src-1, 13-Mer Peptide From N Receptor Coactivator 1; Synonym: Ncoa-1, Steroid Receptor Coactivator-1, Src-1, Rip Protein; Ec: 2.3.1.48 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 21 21 21	R_factor 0.189 R_Free 0.246
crystal cell	length a length b length c angle alpha angle beta angle gamma 53.483 65.897 87.538 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.99 Å
ligand	GOL, RO0	enzyme	Transferase E.C.2.3.1.48 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	A novel partial agonist of peroxisome proliferator-activated receptor-gamma (PPARgamma) recruits PPARgamma-coactivator-1alpha, prevents triglyceride accumulation, and potentiates insulin signaling in vitro., Burgermeister E, Schnoebelen A, Flament A, Benz J, Stihle M, Gsell B, Rufer A, Ruf A, Kuhn B, Marki HP, Mizrahi J, Sebokova E, Niesor E, Meyer M, Mol Endocrinol. 2006 Apr;20(4):809-30. Epub 2005 Dec 22. PMID:16373399

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk] Biological Unit Coordinates (2fvj.pdb1.gz) 49 Kb LPC: Ligand-Protein Contacts for 2FVJ CSU: Contacts of Structural Units for 2FVJ Likely Quarternary Molecular Structure file(s) for 2FVJ Structure Factors (157 Kb) Retrieve 2FVJ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2FVJ from S2C, [Save to disk] Re-refined 2fvj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2FVJ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2FVJ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2FVJ, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2fvj_A] [2fvj] [2fvj_B] SWISS-PROT database: [Q15788] [P37231] Domain organization of [NCOA1_HUMAN] [PPARG_HUMAN] by SWISSPFAM Domain found in 2FVJ: [HOLI ] by SMART

Other resources with information on 2FVJ

Community annotation for 2FVJ at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---