2FXL Oxidoreductase date Feb 06, 2006
title Urate Oxidase From Aspergillus Flavus Complexed With Allanto
authors L.Gabison, M.Chiadmi, N.Colloc'H, T.Prange
compound source
Molecule: Uricase
Chain: A
Synonym: Urate Oxidase
Ec: 1.7.3.3
Engineered: Yes
Organism_scientific: Aspergillus Flavus
Organism_taxid: 5059
Gene: Uaz, Uox
Expression_system: Saccharomyces Cerevisiae
Expression_system_common: Baker'S Yeast
Expression_system_taxid: 4932
symmetry Space Group: I 2 2 2
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
80.364 96.086 105.368 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.76 Å
ligand 2AL, SAC enzyme Oxidoreductase E.C.1.7.3.3 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceRecapture of [S]-allantoin, the product of the two-step degradation of uric acid, by urate oxidase., Gabison L, Chiadmi M, Colloc'h N, Castro B, El Hajji M, Prange T, FEBS Lett. 2006 Apr 3;580(8):2087-91. Epub 2006 Mar 10. PMID:16545381
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk]
  • Biological Unit Coordinates (2fxl.pdb1.gz) 201 Kb
  • LPC: Ligand-Protein Contacts for 2FXL
  • CSU: Contacts of Structural Units for 2FXL
  • Likely Quarternary Molecular Structure file(s) for 2FXL
  • Structure Factors (300 Kb)
  • Retrieve 2FXL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2FXL from S2C, [Save to disk]
  • Re-refined 2fxl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2FXL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2FXL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2FXL, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2fxl] [2fxl_A]
  • SWISS-PROT database: [Q00511]
  • Domain organization of [URIC_ASPFL] by SWISSPFAM
  • Other resources with information on 2FXL
  • Community annotation for 2FXL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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