2FYM	Lyase	date	Feb 08, 2006
title	Crystal Structure Of E. Coli Enolase Complexed With The Mini Binding Segment Of Rnase E.
authors	V.Chandran, B.F.Luisi
compound		source
Molecule: Enolase Chain: A, C, D, F Synonym: 2-Phosphoglycerate Dehydratase, 2-Phospho-D- Glyce Hydro-Lyase; Ec: 4.2.1.11 Engineered: Yes		Organism_scientific: Escherichia Coli Organism_taxid: 562 Gene: Eno Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet11a
Molecule: Ribonuclease E Chain: B, E Fragment: Residues 833-850 Synonym: Rnase E Ec: 3.1.4.- Engineered: Yes		Synthetic: Yes Other_details: The E. Coli Rnase E Peptide Was Synthesized.
symmetry	Space Group: P 1 21 1	R_factor 0.165 R_Free 0.201
crystal cell	length a length b length c angle alpha angle beta angle gamma 77.054 124.201 96.076 90.00 90.58 90.00
method	X-Ray Diffraction	resolution	1.60 Å
ligand	MG	enzyme	Lyase E.C.4.2.1.11 BRENDA
Gene Ontology	Chain Function Process Component F, A, D, C
Primary reference	Recognition of Enolase in the Escherichia coli RNA Degradosome., Chandran V, Luisi BF, J Mol Biol. 2006 Apr 21;358(1):8-15. Epub 2006 Feb 21. PMID:16516921

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (573 Kb) [Save to disk] Biological Unit Coordinates (2fym.pdb1.gz) 284 Kb Biological Unit Coordinates (2fym.pdb2.gz) 287 Kb Biological Unit Coordinates (2fym.pdb3.gz) 566 Kb LPC: Ligand-Protein Contacts for 2FYM CSU: Contacts of Structural Units for 2FYM Likely Quarternary Molecular Structure file(s) for 2FYM Structure Factors (8268 Kb) Retrieve 2FYM in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2FYM from S2C, [Save to disk] Re-refined 2fym structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2FYM in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2FYM

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2FYM, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2fym_F] [2fym_C] [2fym_D] [2fym_A] [2fym_B] [2fym] [2fym_E] SWISS-PROT database: [P0A6P9] [P21513] Domain organization of [ENO_ECOLI] [RNE_ECOLI] by SWISSPFAM Domains found in 2FYM: [Enolase_C] [Enolase_N ] by SMART

Other resources with information on 2FYM

Community annotation for 2FYM at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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