2FYU Oxidoreductase date Feb 08, 2006
title Crystal Structure Of Bovine Heart Mitochondrial Bc1 With Jg1 Inhibitor
authors D.Xia, L.Esser
compound source
Molecule: Ubiquinol-Cytochrome-C Reductase Complex Core Pro Mitochondrial;
Chain: A
Fragment: Core1
Ec: 1.10.2.2
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913

Molecule: Ubiquinol-Cytochrome-C Reductase Complex Core Pro Mitochondrial;
Chain: B
Fragment: Core2
Synonym: Complex III Subunit II
Ec: 1.10.2.2

Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913

Molecule: Cytochrome B
Chain: C
Fragment: Cytochrome B

Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913

Molecule: Cytochrome C1, Heme Protein, Mitochondrial
Chain: D
Fragment: Cytochrome C1
Synonym: Cytochrome C-1

Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913

Molecule: Ubiquinol-Cytochrome C Reductase Iron-Sulfur Subu Mitochondrial;
Chain: E
Fragment: Iron-Sulfur Protein
Synonym: Risp
Ec: 1.10.2.2

Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913

Molecule: Hypothetical Protein Loc616871
Chain: F
Fragment: Subunit 6

Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913

Molecule: Ubiquinol-Cytochrome C Reductase Complex Ubiquino Protein Qp-C;
Chain: G
Fragment: Subunit 7
Synonym: Ubiquinol-Cytochrome C Reductase Complex 9.5 Kda P Complex III Subunit Vii;
Ec: 1.10.2.2

Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913

Molecule: Ubiquinol-Cytochrome C Reductase Complex 11 Kda P
Chain: H
Fragment: Subunit 8
Synonym: Mitochondrial Hinge Protein, Cytochrome C1, Nonhem Protein, Complex III Subunit Viii;
Ec: 1.10.2.2

Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913

Molecule: Ubiquinol-Cytochrome C Reductase Iron-Sulfur Subu Mitochondrial;
Chain: I
Fragment: Iron-Sulfur Protein Signal Sequence

Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913

Molecule: Ubiquinol-Cytochrome C Reductase Complex 7.2 Kda
Chain: J
Fragment: Subunit 10
Synonym: Cytochrome C1, Nonheme 7 Kda Protein, Complex III
Ec: 1.10.2.2

Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913

Molecule: Ubiquinol-Cytochrome C Reductase Complex 6.4 Kda
Chain: K
Fragment: Subunit 11
Synonym: Complex III Subunit Xi
Ec: 1.10.2.2

Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
symmetry Space Group: I 41 2 2
R_factor 0.248 R_Free 0.283
crystal
cell
length a length b length c angle alpha angle beta angle gamma
154.263 154.263 590.191 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.26 Å
ligand FDN, FES, HEM enzyme Oxidoreductase E.C.1.10.2.2 BRENDA
note 2FYU is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


B


C


D


E


F


G


H


I


J


K
  • ubiquinol-cytochrome-c reduc...


  • Primary referenceSurface-modulated motion switch: Capture and release of iron-sulfur protein in the cytochrome bc1 complex., Esser L, Gong X, Yang S, Yu L, Yu CA, Xia D, Proc Natl Acad Sci U S A. 2006 Aug 21;. PMID:16924113
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (347 Kb) [Save to disk]
  • Biological Unit Coordinates (2fyu.pdb1.gz) 661 Kb
  • LPC: Ligand-Protein Contacts for 2FYU
  • CSU: Contacts of Structural Units for 2FYU
  • Likely Quarternary Molecular Structure file(s) for 2FYU
  • Retrieve 2FYU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2FYU from S2C, [Save to disk]
  • View 2FYU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2FYU
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2FYU, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2fyu_G] [2fyu_A] [2fyu_K] [2fyu_E] [2fyu_F] [2fyu] [2fyu_B] [2fyu_D] [2fyu_J] [2fyu_H] [2fyu_I] [2fyu_C]
  • SWISS-PROT database: [P00125] [P00157] [P07552] [P31800] [P23004] [P00126] [P00129] [P13271] [P00130] [P13272]
  • Belongs to the proton-translocating quinol:cytochrome c reductase (qcr) superfamily according to TCDB.
  • Domain organization of [CY1_BOVIN] [CYB_BOVIN] [QCR10_BOVIN] [QCR1_BOVIN] [QCR2_BOVIN] [QCR6_BOVIN] [QCR7_BOVIN] [QCR8_BOVIN] [QCR9_BOVIN] [UCRI_BOVIN] by SWISSPFAM
  • Other resources with information on 2FYU
  • Community annotation for 2FYU at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science