2G00	Hydrolase	date	Feb 10, 2006
title	Factor Xa In Complex With The Inhibitor 3-(6-(2'-((Dimethyla Methyl)-4-Biphenylyl)-7-Oxo-3-(Trifluoromethyl)-4,5,6,7-Tet 1h-Pyrazolo[3,4-C]Pyridin-1-Yl)Benzamide
authors	R.S.Alexander
compound		source
Molecule: Coagulation Factor X Chain: A Fragment: Coagulation Factor X, Heavy Chain Synonym: Stuart Factor, Stuart-Prower Factor Ec: 3.4.21.6 Other_details: Proteolytic Cleavage Product		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
Molecule: Coagulation Factor X Chain: L Fragment: Coagulation Factor X, Light Chain Synonym: Stuart Factor, Stuart-Prower Factor Ec: 3.4.21.6 Other_details: Proteolytic Cleavage Product		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
symmetry	Space Group: P 21 21 21	R_factor 0.269 R_Free 0.284
crystal cell	length a length b length c angle alpha angle beta angle gamma 56.600 72.400 78.900 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.10 Å
ligand	4QC BindingDB	enzyme	Hydrolase E.C.3.4.21.6 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Discovery of potent, efficacious, and orally bioavailable inhibitors of blood coagulation factor Xa with neutral P1 moieties., Pinto DJ, Galemmo RA Jr, Quan ML, Orwat MJ, Clark C, Li R, Wells B, Woerner F, Alexander RS, Rossi KA, Smallwood A, Wong PC, Luettgen JM, Rendina AR, Knabb RM, He K, Wexler RR, Lam PY, Bioorg Med Chem Lett. 2006 Nov 1;16(21):5584-9. Epub 2006 Sep 11. PMID:16963264

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk] Biological Unit Coordinates (2g00.pdb1.gz) 48 Kb LPC: Ligand-Protein Contacts for 2G00 CSU: Contacts of Structural Units for 2G00 Likely Quarternary Molecular Structure file(s) for 2G00 Structure Factors (283 Kb) Retrieve 2G00 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2G00 from S2C, [Save to disk] Re-refined 2g00 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2G00 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2G00

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2G00, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2g00_L] [2g00] [2g00_A] SWISS-PROT database: [P00742] Domain organization of [FA10_HUMAN] by SWISSPFAM Domains found in 2G00: [EGF] [Tryp_SPc ] by SMART

Other resources with information on 2G00

Community annotation for 2G00 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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