2G2Z Transferase date Feb 17, 2006
title Structure Of E.Coli Fabd Complexed With Malonyl-Coa
authors Christian Oefner
compound source
Molecule: Malonyl Coa-Acyl Carrier Protein Transacylase
Chain: A
Synonym: Mct, Acyltransferase, Malonyl-Coa Acp Transacylase
Ec: 2.3.1.39
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 83333
Strain: K12
Gene: Fabd
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: M15
Expression_system_vector_type: Pds
Expression_system_plasmid: Pds56
symmetry Space Group: P 41 21 2
R_factor 0.238 R_Free 0.284
crystal
cell
length a length b length c angle alpha angle beta angle gamma
83.337 83.337 164.365 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand COZ, MLA enzyme Transferase E.C.2.3.1.39 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceMapping the active site of Escherichia coli malonyl-CoA-acyl carrier protein transacylase (FabD) by protein crystallography., Oefner C, Schulz H, D'Arcy A, Dale GE, Acta Crystallogr D Biol Crystallogr. 2006 Jun;62(Pt 6):613-8. Epub 2006, May 12. PMID:16699188
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk]
  • Biological Unit Coordinates (2g2z.pdb1.gz) 48 Kb
  • LPC: Ligand-Protein Contacts for 2G2Z
  • CSU: Contacts of Structural Units for 2G2Z
  • Likely Quarternary Molecular Structure file(s) for 2G2Z
  • Structure Factors (266 Kb)
  • Retrieve 2G2Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2G2Z from S2C, [Save to disk]
  • Re-refined 2g2z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2G2Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2G2Z
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2G2Z, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2g2z_A] [2g2z]
  • SWISS-PROT database: [P0AAI9]
  • Domain organization of [FABD_ECOLI] by SWISSPFAM
  • Other resources with information on 2G2Z
  • Community annotation for 2G2Z at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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