2G5W Oxidoreductase date Feb 23, 2006
title X-Ray Crystal Structure Of Arabidopsis Thaliana 12-Oxophytod Reductase Isoform 3 (Atopr3) In Complex With 8-Iso Prostagl And Its Cofactor, Flavin Mononucleotide.
authors B.W.Han, T.E.Malone, C.A.Bingman, G.E.Wesenberg, G.N.Phillips Jr B.G.Fox, Center For Eukaryotic Structural Genomics (Cesg)
compound source
Molecule: 12-Oxophytodienoate Reductase 3
Chain: A, B
Synonym: 12-Oxophytodienoate- 10,11-Reductase 3, Opda-Reduc Delayed Dehiscence 1, Atopr3;
Ec: 1.3.1.42
Engineered: Yes
Organism_scientific: Arabidopsis Thaliana
Organism_common: Thale Cress
Organism_taxid: 3702
Gene: At2g06050
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta(De3) Placi Rare
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pvp 13
symmetry Space Group: P 21 21 21
R_factor 0.202 R_Free 0.264
crystal
cell
length a length b length c angle alpha angle beta angle gamma
79.702 86.608 123.583 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.58 Å
ligand 8PG, FMN enzyme Oxidoreductase E.C.1.3.1.42 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structure of Arabidopsis thaliana 12-oxophytodienoate reductase isoform 3 in complex with 8-iso prostaglandin A(1)., Han BW, Malone TE, Kim do J, Bingman CA, Kim HJ, Fox BG, Phillips GN Jr, Proteins. 2011 Nov;79(11):3236-41. doi: 10.1002/prot.23153. Epub 2011 Sep 13. PMID:21915915
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (121 Kb) [Save to disk]
  • Biological Unit Coordinates (2g5w.pdb1.gz) 59 Kb
  • Biological Unit Coordinates (2g5w.pdb2.gz) 59 Kb
  • LPC: Ligand-Protein Contacts for 2G5W
  • CSU: Contacts of Structural Units for 2G5W
  • Likely Quarternary Molecular Structure file(s) for 2G5W
  • Structure Factors (517 Kb)
  • Retrieve 2G5W in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2G5W from S2C, [Save to disk]
  • Re-refined 2g5w structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2G5W in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2G5W
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2G5W, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2g5w_A] [2g5w_B] [2g5w]
  • SWISS-PROT database: [Q9FUP0]
  • Domain organization of [OPR3_ARATH] by SWISSPFAM
  • Other resources with information on 2G5W
  • Community annotation for 2G5W at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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