2G64 Lyase date Feb 24, 2006
title Structure Of Caenorhabditis Elegans 6-Pyruvoyl Tetrahydropte Synthase
authors B.C.Wengerter, Y.Patskovsky, C.Zhan, U.Ramagopal, S.Milstein, M.V S.C.Almo, S.K.Burley, New York Sgx Research Center For Struct Genomics (Nysgxrc)
compound source
Molecule: Putative 6-Pyruvoyl Tetrahydrobiopterin Synthase
Chain: A
Synonym: Ptps, Ptp Synthase
Ec: 4.2.3.12
Engineered: Yes
Mutation: Yes
Organism_scientific: Caenorhabditis Elegans
Organism_taxid: 6239
Gene: B0041.6
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 Ai
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet3a
symmetry Space Group: H 3 2
R_factor 0.161 R_Free 0.219
crystal
cell
length a length b length c angle alpha angle beta angle gamma
69.792 69.792 160.188 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.80 Å
ligand GOL, NA, ZN enzyme Lyase E.C.4.2.3.12 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (33 Kb) [Save to disk]
  • Biological Unit Coordinates (2g64.pdb1.gz) 162 Kb
  • LPC: Ligand-Protein Contacts for 2G64
  • CSU: Contacts of Structural Units for 2G64
  • Likely Quarternary Molecular Structure file(s) for 2G64
  • Structure Factors (146 Kb)
  • Retrieve 2G64 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2G64 from S2C, [Save to disk]
  • Re-refined 2g64 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2G64 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2G64
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2G64, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2g64_A] [2g64]
  • SWISS-PROT database: [O02058]
  • Domain organization of [PTPS_CAEEL] by SWISSPFAM
  • Other resources with information on 2G64
  • Community annotation for 2G64 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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