2G88 Recombination date Mar 02, 2006
title Msreca-Datp Complex
authors R.Krishna, G.P.Manjunath, P.Kumar, A.Surolia, N.R.Chandra, K.Muni M.Vijayan
compound source
Molecule: Protein Reca
Chain: A
Synonym: Recombinase A
Engineered: Yes
 Organism_scientific: Mycobacterium Smegmatis
Organism_taxid: 1772
Gene: Reca
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Jc10289
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pthioa
symmetry Space Group: P 61
R_factor 0.237 R_Free 0.309
crystal
cell
length a length b length c angle alpha angle beta angle gamma
108.212 108.212 72.970 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.20 Å
ligand CIT, DTP, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystallographic identification of an ordered C-terminal domain and a second nucleotide-binding site in RecA: new insights into allostery., Krishna R, Manjunath GP, Kumar P, Surolia A, Chandra NR, Muniyappa K, Vijayan M, Nucleic Acids Res. 2006 Apr 28;34(8):2186-95. Print 2006. PMID:16648362
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk]
  • Biological Unit Coordinates (2g88.pdb1.gz) 49 Kb
  • LPC: Ligand-Protein Contacts for 2G88
  • CSU: Contacts of Structural Units for 2G88
  • Likely Quarternary Molecular Structure file(s) for 2G88
  • Structure Factors (121 Kb)
  • Retrieve 2G88 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2G88 from S2C, [Save to disk]
  • Re-refined 2g88 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2G88 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2G88
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2G88, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2g88] [2g88_A]
  • SWISS-PROT database: [Q59560]
  • Domain organization of [RECA_MYCS2] by SWISSPFAM
  • Domain found in 2G88: [AAA ] by SMART
    • Other resources with information on 2G88
  • Community annotation for 2G88 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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