4GEV E. coli thymidylate synthase Y209W variant in complex with substrate and a cofactor analog date
authors Newby, Z., Lee, T.T., Finer-Moore, J., Stroud, R.M.
compound source
symmetry
R_factor
R_Free 0.1512
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.30
ligand CB3, CXM, UMC enzyme
note 4GEV supersedes 2G8M
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceA Remote Mutation Affects the Hydride Transfer by Disrupting Concerted Protein Motions in Thymidylate Synthase., Wang Z, Abeysinghe T, Finer-Moore JS, Stroud RM, Kohen A, J Am Chem Soc. 2012 Oct 15. PMID:23034004
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (299 Kb) [Save to disk]
  • Biological Unit Coordinates (4gev.pdb1.gz) 293 Kb
  • LPC: Ligand-Protein Contacts for 4GEV
  • CSU: Contacts of Structural Units for 4GEV
  • Structure Factors (1083 Kb)
  • Retrieve 4GEV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4GEV from S2C, [Save to disk]
  • Re-refined 4gev structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4GEV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4GEV
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4GEV, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4gev_A] [4gev] [4gev_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4GEV
  • Community annotation for 4GEV at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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