2G9L Antibiotic date Mar 06, 2006
title The High-Resolution Solution Conformation Of An Antimicrobia Gaegurin 4 And Its Mode Of Membrane Interaction
authors S.W.Chi, K.H.Han
compound source
Molecule: Gaegurin-4
Chain: A
Synonym: Ggn4
Engineered: Yes
Synthetic: Yes
Other_details: The Peptide Was Chemically Synthesized. The Occurs Naturally Found In Korean Frog, Rana Rugosa.
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structure and membrane interaction mode of an antimicrobial peptide gaegurin 4., Chi SW, Kim JS, Kim DH, Lee SH, Park YH, Han KH, Biochem Biophys Res Commun. 2007 Jan 19;352(3):592-7. Epub 2006 Nov 27. PMID:17141187
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (146 Kb) [Save to disk]
  • Biological Unit Coordinates (2g9l.pdb1.gz) 10 Kb
  • CSU: Contacts of Structural Units for 2G9L
  • Original NMR restraints for 2G9L from PDB
  • Retrieve 2G9L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2G9L from S2C, [Save to disk]
  • View 2G9L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2G9L
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2G9L, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2g9l_A] [2g9l]
  • SWISS-PROT database: [P80398]
  • Belongs to the dermaseptin (dermaseptin) family according to TCDB.
  • Domain organization of [GGN4_RANRU] by SWISSPFAM
  • Other resources with information on 2G9L
  • Community annotation for 2G9L at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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