2GA9 Transferase date Mar 08, 2006
title Crystal Structure Of The Heterodimeric Vaccinia Virus Polyad Polymerase With Bound Atp-Gamma-S
authors C.M.Moure, B.R.Bowman, P.D.Gershon, F.A.Quiocho
compound source
Molecule: Cap-Specific Mrna (Nucleoside-2'-O-)-Methyltransf
Chain: A
Synonym: Polya, Polymerase Regulatory Subunit, Polya, Polym Small Subunit, Pap-S, Vp39;
Ec: 2.1.1.57
Engineered: Yes
Mutation: Yes
Organism_scientific: Vaccinia Virus
Organism_taxid: 10245
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 De3
Expression_system_vector_type: Ppg177
Expression_system_vector: Plasmid

Molecule: Poly(A) Polymerase Catalytic Subunit
Chain: D
Synonym: Polya, Polymerase Large Subunit, Pap-L, Vp55
Ec: 2.7.7.19
Engineered: Yes
Mutation: Yes

Organism_scientific: Vaccinia Virus
Organism_taxid: 10245
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 Rosetta
symmetry Space Group: P 21 21 21
R_factor 0.222 R_Free 0.260
crystal
cell
length a length b length c angle alpha angle beta angle gamma
70.050 91.690 133.700 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand AGS, CA enzyme Transferase E.C.2.1.1.57 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


D


Primary referenceCrystal structures of the vaccinia virus polyadenylate polymerase heterodimer: insights into ATP selectivity and processivity., Moure CM, Bowman BR, Gershon PD, Quiocho FA, Mol Cell. 2006 May 5;22(3):339-49. PMID:16678106
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (131 Kb) [Save to disk]
  • Biological Unit Coordinates (2ga9.pdb1.gz) 125 Kb
  • LPC: Ligand-Protein Contacts for 2GA9
  • CSU: Contacts of Structural Units for 2GA9
  • Likely Quarternary Molecular Structure file(s) for 2GA9
  • Structure Factors (449 Kb)
  • Retrieve 2GA9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2GA9 from S2C, [Save to disk]
  • Re-refined 2ga9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2GA9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2GA9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2GA9, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ga9_A] [2ga9_D] [2ga9]
  • SWISS-PROT database: [P23371] [P07617]
  • Domain organization of [PAP1_VACCW] [PAP2_VACCW] by SWISSPFAM
  • Other resources with information on 2GA9
  • Community annotation for 2GA9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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