2GB0 Oxidoreductase date Mar 09, 2006
title Monomeric Sarcosine Oxidase: Structure Of A Covalently Flavi Amine Oxidizing Enzyme
authors P.Trickey, M.A.Wagner, M.S.Jorns, F.S.Mathews
compound source
Molecule: Monomeric Sarcosine Oxidase
Chain: A, B
Synonym: Msox
Ec: 1.5.3.1
Engineered: Yes
Organism_scientific: Bacillus Sp.
Organism_taxid: 69000
Strain: B-0618
Gene: Soxa, Sox
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Dh1
Expression_system_vector_type: Plasmid
symmetry Space Group: P 1 21 1
R_factor 0.165 R_Free 0.198
crystal
cell
length a length b length c angle alpha angle beta angle gamma
72.562 69.555 74.117 90.00 94.26 90.00
method X-Ray Diffractionresolution 1.85 Å
ligand CL, FAD, PO4 enzyme Oxidoreductase E.C.1.5.3.1 BRENDA
note 2GB0 supersedes 1L9F, 1B3M
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceMonomeric sarcosine oxidase: structure of a covalently flavinylated amine oxidizing enzyme., Trickey P, Wagner MA, Jorns MS, Mathews FS, Structure. 1999 Mar 15;7(3):331-45. PMID:10368302
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (145 Kb) [Save to disk]
  • Biological Unit Coordinates (2gb0.pdb1.gz) 71 Kb
  • Biological Unit Coordinates (2gb0.pdb2.gz) 72 Kb
  • LPC: Ligand-Protein Contacts for 2GB0
  • CSU: Contacts of Structural Units for 2GB0
  • Likely Quarternary Molecular Structure file(s) for 2GB0
  • Structure Factors (585 Kb)
  • Retrieve 2GB0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2GB0 from S2C, [Save to disk]
  • Re-refined 2gb0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2GB0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2GB0
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2GB0, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2gb0_B] [2gb0] [2gb0_A]
  • SWISS-PROT database: [P40859]
  • Domain organization of [MSOX_BACB0] by SWISSPFAM
  • Other resources with information on 2GB0
  • Community annotation for 2GB0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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