2GB9 d(CGTACG)2 crosslinked bis-acridine complex date
authors Hopcroft, N.H., Brogden, A.L., Searcey, M., Cardin, C.J.
compound source
symmetry
R_factor
R_Free 0.2544
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.70
ligand A4C, SR enzyme
Primary referenceX-ray crystallographic study of DNA duplex cross-linking: simultaneous binding to two d(CGTACG)2 molecules by a bis(9-aminoacridine-4-carboxamide) derivative., Hopcroft NH, Brogden AL, Searcey M, Cardin CJ, Nucleic Acids Res. 2006;34(22):6663-72. Epub 2006 Dec 1. PMID:17145714
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (13 Kb) [Save to disk]
  • Biological Unit Coordinates (2gb9.pdb1.gz) 24 Kb
  • LPC: Ligand-Protein Contacts for 2GB9
  • CSU: Contacts of Structural Units for 2GB9
  • Likely Quarternary Molecular Structure file(s) for 2GB9
  • Structure Factors (122 Kb)
  • Retrieve 2GB9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2GB9 from S2C, [Save to disk]
  • Re-refined 2gb9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2GB9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2GB9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2GB9, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2gb9] [2gb9_A] [2gb9_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2GB9
  • Community annotation for 2GB9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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