2GBK Protein Binding date Mar 10, 2006
title Crystal Structure Of The 9-10 Moad Insertion Mutant Of Ubiqu
authors D.M.Ferraro, D.J.Ferraro, S.Ramaswamy, A.D.Robertson
compound source
Molecule: Ubiquitin
Chain: A, B, C, D
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Prs
symmetry Space Group: P 1
R_factor 0.244 R_Free 0.287
crystal
cell
length a length b length c angle alpha angle beta angle gamma
30.046 45.895 54.382 79.91 74.99 81.33
method X-Ray Diffractionresolution 1.99 Å
Primary referenceStructures of Ubiquitin Insertion Mutants Support Site-specific Reflex Response to Insertions Hypothesis., Ferraro DM, Ferraro DJ, Ramaswamy S, Robertson AD, J Mol Biol. 2006 Jun 2;359(2):390-402. Epub 2006 Apr 5. PMID:16647719
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (60 Kb) [Save to disk]
  • Biological Unit Coordinates (2gbk.pdb1.gz) 15 Kb
  • Biological Unit Coordinates (2gbk.pdb2.gz) 15 Kb
  • Biological Unit Coordinates (2gbk.pdb3.gz) 15 Kb
  • Biological Unit Coordinates (2gbk.pdb4.gz) 14 Kb
  • Biological Unit Coordinates (2gbk.pdb5.gz) 28 Kb
  • Biological Unit Coordinates (2gbk.pdb6.gz) 28 Kb
  • CSU: Contacts of Structural Units for 2GBK
  • Likely Quarternary Molecular Structure file(s) for 2GBK
  • Structure Factors (121 Kb)
  • Retrieve 2GBK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2GBK from S2C, [Save to disk]
  • Re-refined 2gbk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2GBK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2GBK
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2GBK, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2gbk_B] [2gbk_A] [2gbk_C] [2gbk] [2gbk_D]
  • SWISS-PROT database: [P62988] [Q867C3]
  • Domain organization of [UBIQ_HUMAN] [UBIQ_PANTR] by SWISSPFAM
  • Domain found in 2GBK: [UBQ ] by SMART
    • Other resources with information on 2GBK
  • Community annotation for 2GBK at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science