2GBR Protein Binding date Mar 10, 2006
title Crystal Structure Of The 35-36 Moad Insertion Mutant Of Ubiq
authors D.M.Ferraro, D.J.Ferraro, S.Ramaswamy, A.D.Robertson
compound source
Molecule: Ubiquitin
Chain: A, B, C
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Prs
symmetry Space Group: P 21 21 21
R_factor 0.216 R_Free 0.290
crystal
cell
length a length b length c angle alpha angle beta angle gamma
44.465 54.807 92.627 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand CD enzyme
Primary referenceStructures of Ubiquitin Insertion Mutants Support Site-specific Reflex Response to Insertions Hypothesis., Ferraro DM, Ferraro DJ, Ramaswamy S, Robertson AD, J Mol Biol. 2006 Jun 2;359(2):390-402. Epub 2006 Apr 5. PMID:16647719
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (48 Kb) [Save to disk]
  • Biological Unit Coordinates (2gbr.pdb1.gz) 15 Kb
  • Biological Unit Coordinates (2gbr.pdb2.gz) 15 Kb
  • Biological Unit Coordinates (2gbr.pdb3.gz) 15 Kb
  • Biological Unit Coordinates (2gbr.pdb4.gz) 41 Kb
  • Biological Unit Coordinates (2gbr.pdb5.gz) 29 Kb
  • LPC: Ligand-Protein Contacts for 2GBR
  • CSU: Contacts of Structural Units for 2GBR
  • Likely Quarternary Molecular Structure file(s) for 2GBR
  • Structure Factors (108 Kb)
  • Retrieve 2GBR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2GBR from S2C, [Save to disk]
  • Re-refined 2gbr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2GBR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2GBR
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2GBR, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2gbr_A] [2gbr_C] [2gbr] [2gbr_B]
  • SWISS-PROT database: [P62988]
  • Domain organization of [UBIQ_HUMAN] by SWISSPFAM
  • Domain found in 2GBR: [UBQ ] by SMART
    • Other resources with information on 2GBR
  • Community annotation for 2GBR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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