2GBY Transcription date Mar 12, 2006
title Structure Of Qacr Multidrug Transcriptional Regulator Bound Bivalent Diamidine Berenil
authors J.T.Schuman
compound source
Molecule: Hth-Type Transcriptional Regulator Qacr
Chain: B, D, A, E
Engineered: Yes
Organism_scientific: Staphylococcus Aureus
Organism_taxid: 1280
Gene: Qacr
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 42 21 2
R_factor 0.249 R_Free 0.290
crystal
cell
length a length b length c angle alpha angle beta angle gamma
171.340 171.340 94.530 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.90 Å
ligand BRN, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, E, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (131 Kb) [Save to disk]
  • Biological Unit Coordinates (2gby.pdb1.gz) 64 Kb
  • Biological Unit Coordinates (2gby.pdb2.gz) 63 Kb
  • Biological Unit Coordinates (2gby.pdb3.gz) 494 Kb
  • Biological Unit Coordinates (2gby.pdb4.gz) 495 Kb
  • LPC: Ligand-Protein Contacts for 2GBY
  • CSU: Contacts of Structural Units for 2GBY
  • Likely Quarternary Molecular Structure file(s) for 2GBY
  • Structure Factors (296 Kb)
  • Retrieve 2GBY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2GBY from S2C, [Save to disk]
  • Re-refined 2gby structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2GBY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2GBY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2GBY, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2gby] [2gby_B] [2gby_A] [2gby_E] [2gby_D]
  • SWISS-PROT database: [P0A0N4]
  • Domain organization of [QACR_STAAU] by SWISSPFAM
  • Other resources with information on 2GBY
  • Community annotation for 2GBY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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