2GCG	Oxidoreductase	date	Mar 14, 2006
title	Ternary Crystal Structure Of Human Glyoxylate Reductasehydroxypyruvate Reductase
authors	M.P.S.Booth, R.Conners, G.Rumsby, R.L.Brady
compound		source
Molecule: Glyoxylate Reductasehydroxypyruvate Reductase Chain: A, B, C, D Ec: 1.1.1.79 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Ptrchisb
symmetry	Space Group: P 1 21 1	R_factor 0.201 R_Free 0.282
crystal cell	length a length b length c angle alpha angle beta angle gamma 76.568 66.877 149.780 90.00 98.22 90.00
method	X-Ray Diffraction	resolution	2.20 Å
ligand	DGY, NDP, SO4	enzyme	Oxidoreductase E.C.1.1.1.79 BRENDA
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Structural basis of substrate specificity in human glyoxylate reductase/hydroxypyruvate reductase., Booth MP, Conners R, Rumsby G, Brady RL, J Mol Biol. 2006 Jun 30;360(1):178-89. Epub 2006 May 22. PMID:16756993

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (223 Kb) [Save to disk] Biological Unit Coordinates (2gcg.pdb1.gz) 108 Kb Biological Unit Coordinates (2gcg.pdb2.gz) 107 Kb LPC: Ligand-Protein Contacts for 2GCG CSU: Contacts of Structural Units for 2GCG Likely Quarternary Molecular Structure file(s) for 2GCG Structure Factors (576 Kb) Retrieve 2GCG in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2GCG from S2C, [Save to disk] Re-refined 2gcg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2GCG in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2GCG

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2GCG, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2gcg] [2gcg_D] [2gcg_C] [2gcg_B] [2gcg_A] SWISS-PROT database: [Q9UBQ7] Domain organization of [GRHPR_HUMAN] by SWISSPFAM

Other resources with information on 2GCG

Community annotation for 2GCG at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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