2GDA Glucocorticoid Receptor date Mar 15, 1994
title Refined Solution Structure Of The Glucocorticoid Receptor Dn Domain
authors H.Baumann, K.Paulsen, H.Kovacs, H.Berglund, A.P.H.Wright, J.A.Gu T.Hard
compound source
Molecule: Glucocorticoid Receptor
Chain: A
Engineered: Yes
 Organism_scientific: Rattus Norvegicus
Organism_common: Norway Rat
Organism_taxid: 10116
methodSolution NMR
ligand ZN enzyme
related structures by homologous chain: 1RGD
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceRefined solution structure of the glucocorticoid receptor DNA-binding domain., Baumann H, Paulsen K, Kovacs H, Berglund H, Wright AP, Gustafsson JA, Hard T, Biochemistry 1993 Dec 14;32(49):13463-71. PMID:8257681
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (448 Kb) [Save to disk]
  • Biological Unit Coordinates (2gda.pdb1.gz) 19 Kb
  • LPC: Ligand-Protein Contacts for 2GDA
  • CSU: Contacts of Structural Units for 2GDA
  • Original NMR restraints for 2GDA from PDB
  • Retrieve 2GDA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2GDA from S2C, [Save to disk]
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  • Proteopedia, because life has more than 2D.
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    • Visual 3D analysis of 2GDA
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2GDA, from MSDmotif at EBI
  • Genome occurence of 2GDA's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d2gda__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2gda] [2gda_A]
  • SWISS-PROT database: [P06536]
  • Domain organization of [GCR_RAT] by SWISSPFAM
  • Domain found in 2GDA: [ZnF_C4 ] by SMART
    • Other resources with information on 2GDA
  • Community annotation for 2GDA at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Domain movements in 2GDA from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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