2GDR	Transferase	date	Mar 16, 2006
title	Crystal Structure Of A Bacterial Glutathione Transferase
authors	E.I.Tocheva, P.D.Fortin, L.D.Eltis, M.E.P.Murphy
compound		source
Molecule: Glutathione S-Transferase Chain: A, B, C, D, E, F Ec: 2.5.1.18 Engineered: Yes		Organism_scientific: Burkholderia Xenovorans Organism_taxid: 266265 Strain: Lb400 Gene: Bphk Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 65	R_factor 0.161 R_Free 0.205
crystal cell	length a length b length c angle alpha angle beta angle gamma 103.440 103.440 262.280 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.10 Å
ligand	GSH	enzyme	Transferase E.C.2.5.1.18 BRENDA
Gene Ontology	Chain Function Process Component F, A, D, C, E, B
Primary reference	Structures of ternary complexes of BphK, a bacterial glutathione S-transferase that reductively dechlorinates polychlorinated biphenyl metabolites., Tocheva EI, Fortin PD, Eltis LD, Murphy ME, J Biol Chem. 2006 Oct 13;281(41):30933-40. Epub 2006 Aug 17. PMID:16920719

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (199 Kb) [Save to disk] Biological Unit Coordinates (2gdr.pdb1.gz) 66 Kb Biological Unit Coordinates (2gdr.pdb2.gz) 67 Kb Biological Unit Coordinates (2gdr.pdb3.gz) 67 Kb LPC: Ligand-Protein Contacts for 2GDR CSU: Contacts of Structural Units for 2GDR Likely Quarternary Molecular Structure file(s) for 2GDR Structure Factors (706 Kb) Retrieve 2GDR in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2GDR from S2C, [Save to disk] Re-refined 2gdr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2GDR in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2GDR

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2GDR, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2gdr_D] [2gdr_C] [2gdr_F] [2gdr_A] [2gdr] [2gdr_E] [2gdr_B] SWISS-PROT database: [Q59721] Domain organization of [Q59721_BURXL] by SWISSPFAM

Other resources with information on 2GDR

Community annotation for 2GDR at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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