2GDV	Transferase	date	Mar 17, 2006
title	Sucrose Phosphorylase From Bifidobacterium Adolescentis Reac Sucrose
authors	L.K.Skov, O.Mirza, M.Gajhede, J.S.Katsrup
compound		source
Molecule: Sucrose Phosphorylase Chain: A, B Ec: 2.4.1.7 Engineered: Yes		Organism_scientific: Bifidobacterium Adolescentis Organism_taxid: 1680 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Xl-1 Blue Mrf Expression_system_vector_type: Plasmid Expression_system_plasmid: Pbluescript
symmetry	Space Group: P 21 21 21	R_factor 0.198 R_Free 0.237
crystal cell	length a length b length c angle alpha angle beta angle gamma 75.740 103.070 150.690 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	BGC	enzyme	Transferase E.C.2.4.1.7 BRENDA
Gene Ontology	Chain Function Process Component A, B

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (182 Kb) [Save to disk] Biological Unit Coordinates (2gdv.pdb1.gz) 177 Kb LPC: Ligand-Protein Contacts for 2GDV CSU: Contacts of Structural Units for 2GDV Likely Quarternary Molecular Structure file(s) for 2GDV Structure Factors (684 Kb) Retrieve 2GDV in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2GDV from S2C, [Save to disk] Re-refined 2gdv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2GDV in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2GDV

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2GDV, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2gdv_A] [2gdv] [2gdv_B] SWISS-PROT database: [Q84HQ2] Domain organization of [Q84HQ2_BIFAD] by SWISSPFAM Domain found in 2GDV: [Aamy ] by SMART

Other resources with information on 2GDV

Community annotation for 2GDV at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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