2GFC Transferase date Mar 21, 2006
title Camp-Dependent Protein Kinase Pka Catalytic Subunit With Pki-5-24
authors S.Bonn, S.Herrero, C.B.Breitenlechner, R.A.Engh, M.Gassel, D.Bossemeyer
compound source
Molecule: Camp-Dependent Protein Kinase, Alpha-Catalytic Subunit;
Chain: A
Synonym: Pka C-Alpha
Ec: 2.7.1.37
Engineered: Yes
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Gene: Prkaca
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21de3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pt7-7

Molecule: Camp-Dependent Protein Kinase Inhibitor Alpha
Chain: I
Fragment: Inhibitory Fragment (Residues: 5 To 24)
Synonym: Pki-Alpha, Camp- Dependent Protein Kinase Inhibitor, Musclebrain Isoform;
Engineered: Yes

Synthetic: Yes
Other_details: Peptide Synthesis
symmetry Space Group: P 21 21 21
R_factor 0.192 R_Free 0.239
crystal
cell
length a length b length c angle alpha angle beta angle gamma
72.492 75.533 80.387 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.87 Å
ligand OCT, SEP, TPO enzyme Transferase E.C.2.7.1.37 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


I


Primary referenceStructural analysis of protein kinase A mutants with Rho-kinase inhibitor specificity., Bonn S, Herrero S, Breitenlechner CB, Erlbruch A, Lehmann W, Engh RA, Gassel M, Bossemeyer D, J Biol Chem. 2006 Aug 25;281(34):24818-30. Epub 2006 May 12. PMID:16699172
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (70 Kb) [Save to disk]
  • Biological Unit Coordinates (2gfc.pdb1.gz) 65 Kb
  • LPC: Ligand-Protein Contacts for 2GFC
  • CSU: Contacts of Structural Units for 2GFC
  • Likely Quarternary Molecular Structure file(s) for 2GFC
  • Structure Factors (817 Kb)
  • Retrieve 2GFC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2GFC from S2C, [Save to disk]
  • Re-refined 2gfc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2GFC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2GFC
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2GFC, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2gfc_I] [2gfc_A] [2gfc]
  • SWISS-PROT database: [P61926] [P00517]
  • Domain organization of [IPKA_RABIT] [KAPCA_BOVIN] by SWISSPFAM
  • Domains found in 2GFC: [S_TK_X] [S_TKc ] by SMART
  • Other resources with information on 2GFC
  • Community annotation for 2GFC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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