2GFS	Signaling Protein, Transferase	date	Mar 23, 2006
title	P38 Kinase Crystal Structure In Complex With Ro3201195
authors	S.F.Harris, J.Bertrand, A.Villasenor
compound		source
Molecule: Mitogen-Activated Protein Kinase 14 Chain: A Synonym: Mitogen-Activated Protein Kinase P38 Alpha; Map Ki Alpha; Cytokine Suppressive Anti-Inflammatory Drug-Binding Csaid-Binding Protein; Csbp; Max-Interacting Protein 2; Map Mxi2; Sapk2a; Ec: 2.7.1.37 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Mapk14, Csbp, Csbp1, Csbp2, Mxi2 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 21 21 21	R_factor 0.205 R_Free 0.239
crystal cell	length a length b length c angle alpha angle beta angle gamma 45.292 86.480 124.055 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.75 Å
ligand	PQB BindingDB	enzyme	Transferase E.C.2.7.1.37 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Discovery of S-[5-amino-1-(4-fluorophenyl)-1H-pyrazol-4-yl]-[3-(2,3-dihydroxypropoxy)ph enyl]methanone (RO3201195), an orally bioavailable and highly selective inhibitor of p38 MAP kinase., Goldstein DM, Alfredson T, Bertrand J, Browner MF, Clifford K, Dalrymple SA, Dunn J, Freire-Moar J, Harris S, Labadie SS, La Fargue J, Lapierre JM, Larrabee S, Li F, Papp E, McWeeney D, Ramesha C, Roberts R, Rotstein D, San Pablo B, Sjogren EB, So OY, Talamas FX, Tao W, Trejo A, Villasenor A, Welch M, Welch T, Weller P, Whiteley PE, Young K, Zipfel S, J Med Chem. 2006 Mar 9;49(5):1562-75. PMID:16509574

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (67 Kb) [Save to disk] Biological Unit Coordinates (2gfs.pdb1.gz) 62 Kb LPC: Ligand-Protein Contacts for 2GFS CSU: Contacts of Structural Units for 2GFS Likely Quarternary Molecular Structure file(s) for 2GFS Structure Factors (346 Kb) Retrieve 2GFS in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2GFS from S2C, [Save to disk] Re-refined 2gfs structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2GFS in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2GFS

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2GFS, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2gfs_A] [2gfs] SWISS-PROT database: [Q16539] Domain organization of [MK14_HUMAN] by SWISSPFAM Domain found in 2GFS: [S_TKc ] by SMART

Other resources with information on 2GFS

Community annotation for 2GFS at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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