2GFV Transferase date Mar 23, 2006
title Structure Of E. Coli Fabf (Kasii) C163q Mutant
authors S.M.Soisson, G.Parthasarathy
compound source
Molecule: 3-Oxoacyl-[Acyl-Carrier-Protein] Synthase 2
Chain: A
Synonym: 3-Oxoacyl-[Acyl-Carrier-Protein] Synthase II; Beta Acp Synthase II; Kas II; Fabf;
Ec: 2.3.1.41
Engineered: Yes
Mutation: Yes
 Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Fabf, Fabj
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
symmetry Space Group: P 31 2 1
R_factor 0.181 R_Free 0.247
crystal
cell
length a length b length c angle alpha angle beta angle gamma
75.447 75.447 148.034 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.29 Å
ligand
enzyme Transferase E.C.2.3.1.41 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referencePlatensimycin is a selective FabF inhibitor with potent antibiotic properties., Wang J, Soisson SM, Young K, Shoop W, Kodali S, Galgoci A, Painter R, Parthasarathy G, Tang YS, Cummings R, Ha S, Dorso K, Motyl M, Jayasuriya H, Ondeyka J, Herath K, Zhang C, Hernandez L, Allocco J, Basilio A, Tormo JR, Genilloud O, Vicente F, Pelaez F, Colwell L, Lee SH, Michael B, Felcetto T, Gill C, Silver LL, Hermes JD, Bartizal K, Barrett J, Schmatz D, Becker JW, Cully D, Singh SB, Nature. 2006 May 18;441(7091):358-61. PMID:16710421
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (71 Kb) [Save to disk]
  • Biological Unit Coordinates (2gfv.pdb1.gz) 130 Kb
  • CSU: Contacts of Structural Units for 2GFV
  • Likely Quarternary Molecular Structure file(s) for 2GFV
  • Structure Factors (348 Kb)
  • Retrieve 2GFV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2GFV from S2C, [Save to disk]
  • Re-refined 2gfv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2GFV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2GFV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2GFV, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2gfv] [2gfv_A]
  • SWISS-PROT database: [P0AAI5]
  • Domain organization of [FABF_ECOLI] by SWISSPFAM
    • Other resources with information on 2GFV
  • Community annotation for 2GFV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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