2GJ9	Hydrolase	date	Mar 30, 2006
title	Structure Of The Mnme G-Domain In Complex With Gdpalf4-, Mg
authors	A.Scrima, A.Wittinghofer
compound		source
Molecule: Trna Modification Gtpase Trme Chain: A, B, C, D Fragment: G-Domain (216-G384) Synonym: Mnme Engineered: Yes		Organism_scientific: Escherichia Coli Bl21(De3) Organism_taxid: 469008 Strain: Bl21de3 Gene: Trme, Mnme, Thdf Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21de3 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet14b
symmetry	Space Group: P 1 21 1	R_factor 0.250 R_Free 0.299
crystal cell	length a length b length c angle alpha angle beta angle gamma 57.240 70.100 90.210 90.00 95.76 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	ALF, GDP, MG, RB	enzyme
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Dimerisation-dependent GTPase reaction of MnmE: how potassium acts as GTPase-activating element., Scrima A, Wittinghofer A, EMBO J. 2006 Jun 21;25(12):2940-51. Epub 2006 Jun 8. PMID:16763562

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (109 Kb) [Save to disk] Biological Unit Coordinates (2gj9.pdb1.gz) 52 Kb Biological Unit Coordinates (2gj9.pdb2.gz) 52 Kb LPC: Ligand-Protein Contacts for 2GJ9 CSU: Contacts of Structural Units for 2GJ9 Likely Quarternary Molecular Structure file(s) for 2GJ9 Structure Factors (370 Kb) Retrieve 2GJ9 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2GJ9 from S2C, [Save to disk] Re-refined 2gj9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2GJ9 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2GJ9

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2GJ9, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2gj9_A] [2gj9_B] [2gj9] [2gj9_C] [2gj9_D] SWISS-PROT database: [P25522] Domain organization of [MNME_ECOLI] by SWISSPFAM

Other resources with information on 2GJ9

Community annotation for 2GJ9 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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