2GKN Oxygen Storage Transport date Apr 03, 2006
title Crystal Structure Of Mycobacterium Tuberculosis Trhbn, Glne1 Mutant
authors M.Milani, M.Bolognesi
compound source
Molecule: Hemoglobin-Like Protein Hbn
Chain: A, B
Synonym: Truncated Hemoglobin; Trhbn; Flavohemoglobin
Engineered: Yes
Mutation: Yes
Organism_scientific: Mycobacterium Tuberculosis
Organism_taxid: 1773
Gene: Glbn
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.208 R_Free 0.285
crystal
cell
length a length b length c angle alpha angle beta angle gamma
45.034 62.388 90.974 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand CYN, HEM, NA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • thioredoxin peroxidase activ...
  • nitric oxide dioxygenase act...


  • Primary referenceLigand interactions in the distal heme pocket of Mycobacterium tuberculosis truncated hemoglobin N: roles of TyrB10 and GlnE11 residues., Ouellet Y, Milani M, Couture M, Bolognesi M, Guertin M, Biochemistry. 2006 Jul 25;45(29):8770-81. PMID:16846220
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (46 Kb) [Save to disk]
  • Biological Unit Coordinates (2gkn.pdb1.gz) 41 Kb
  • LPC: Ligand-Protein Contacts for 2GKN
  • CSU: Contacts of Structural Units for 2GKN
  • Likely Quarternary Molecular Structure file(s) for 2GKN
  • Structure Factors (544 Kb)
  • Retrieve 2GKN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2GKN from S2C, [Save to disk]
  • Re-refined 2gkn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2GKN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2GKN
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2GKN, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2gkn_A] [2gkn_B] [2gkn]
  • SWISS-PROT database: [P0A592]
  • Domain organization of [GLBN_MYCTU] by SWISSPFAM
  • Other resources with information on 2GKN
  • Community annotation for 2GKN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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