2GKT Hydrolase Inhibitor date Apr 03, 2006
title Crystal Structure Of The P14'-Ala32 Variant Of The N-Termina Truncated Omtky3-Del(1-5)
authors T.W.Lee, M.A.Qasim, M.Laskowski Jr., M.N.G.James
compound source
Molecule: Ovomucoid
Chain: I
Fragment: Turkey Ovomucoid Third Domain Del (1-5)
Engineered: Yes
Mutation: Yes
 Organism_scientific: Meleagris Gallopavo
Organism_common: Turkey
Organism_taxid: 9103
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.130 R_Free 0.151
crystal
cell
length a length b length c angle alpha angle beta angle gamma
23.049 34.692 25.795 90.00 97.30 90.00
method X-Ray Diffractionresolution 1.23 Å
note 2GKT is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
I


Primary referenceStructural insights into the non-additivity effects in the sequence-to-reactivity algorithm for serine peptidases and their inhibitors., Lee TW, Qasim MA, Laskowski M Jr, James MN, J Mol Biol. 2007 Mar 23;367(2):527-46. Epub 2007 Jan 9. PMID:17266986
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (23 Kb) [Save to disk]
  • Biological Unit Coordinates (2gkt.pdb1.gz) 18 Kb
  • CSU: Contacts of Structural Units for 2GKT
  • Likely Quarternary Molecular Structure file(s) for 2GKT
  • Structure Factors (73 Kb)
  • Retrieve 2GKT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2GKT from S2C, [Save to disk]
  • Re-refined 2gkt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2GKT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2GKT
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2GKT, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2gkt] [2gkt_I]
  • SWISS-PROT database: [P68390]
  • Domain organization of [IOVO_MELGA] by SWISSPFAM
  • Domain found in 2GKT: [KAZAL ] by SMART
    • Other resources with information on 2GKT
  • Community annotation for 2GKT at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science