2GL1 Plant Protein date Apr 04, 2006
title Nmr Solution Structure Of Vigna Radiata Defensin 2 (Vrd2)
authors K.F.Lin, T.R.Lee, P.H.Tsai, M.P.Hsu, C.S.Chen, P.C.Lyu
compound source
Molecule: Pdf1
Chain: A
Fragment: Residues 1-47
Synonym: Defensin 2
 Organism_scientific: Vigna Radiata
Organism_taxid: 157791
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure-based protein engineering for alpha-amylase inhibitory activity of plant defensin., Lin KF, Lee TR, Tsai PH, Hsu MP, Chen CS, Lyu PC, Proteins. 2007 Aug 1;68(2):530-40. PMID:17444520
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (219 Kb) [Save to disk]
  • Biological Unit Coordinates (2gl1.pdb1.gz) 12 Kb
  • CSU: Contacts of Structural Units for 2GL1
  • Original NMR restraints for 2GL1 from PDB
  • Retrieve 2GL1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2GL1 from S2C, [Save to disk]
    • View 2GL1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2GL1
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2GL1, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2gl1_A] [2gl1]
  • SWISS-PROT database: [Q8W434]
  • Domain organization of [Q8W434_9FABA] by SWISSPFAM
  • Domain found in 2GL1: [Knot1 ] by SMART
    • Other resources with information on 2GL1
  • Community annotation for 2GL1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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